AMCG00018075 (glyr1,LOC107688117,LOC107590383,LOC107721499)


Basic Information

Item Value
gene id AMCG00018075
gene name glyr1,LOC107688117,LOC107590383,LOC107721499
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 902184 ~ 912776 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018075
GCGACTCCGCACCAAAATGGCACTGCGTGACGCCCCGGGCAAGTCATGTGACCTGAGTGGGTGTGTTCTCCTTCCCGGCATGCACTGCGACGCTTCAACAACATTTCTAAGATGGCGACTGTACATCTACGGATCGGGGATTTGGTTtgGGGGAAGTTGGGACGATATCCACCTTGGCCAGGGAAGatcgTAAGTCCTCCGAAGGATCTGAAGAAGCCAAGAGGCAAAAAATGCTTCTTTGTGAAGTTCTTTGGCACTGAAGATCACGCTTGGATAAAGGTGGAGCAGCTGAAACCATACCATCCCCACAAGGAGGAGATGATAAAGATCAACAAGGGCAAGCGCTTCCAGCAGGCCGTGGATGCGGTGGAGGAGTTTCTGAAGAAAGCCAAGGGCAAGGAACAGGCGCACAACTCCAGCAGCTCGGAGGACAAAAGCAAACTGACGGCGGCCGATGCGAAGGGCAGGAAGAGCGCCGCCAAGACAGTGAAGTCTCTGATGGAGGACGAGGAGGATCTGGGGTCTCGCAAACGGGGCCGCCCCCCGAAAGACGAAAAGGACTTGACGGACCCAGAGTCGTCCTCCGTGCAGCGACTCGTGGCCGGAACCGTGTCGGGATTCAAATGGGAGACTAACCAAGTTCAGGAAGACCCTCACTTCCACCACTTTCTGCTCAGCCAATCTGAGAAGCCAGCATCCTCGTTAGAACCCATCAGCAAGAGACTGAAGATCATAGAAGAGGACGCCGGATCGACGTCGATCCAAGCGGCCGACAGCACGGCGGTCAACGGCAGCATCACCCCCACAGACAAAAGGATAGGGTTTCTGGGTCTGGGTCTGATGGGAAGTGGCATCGTTTCAAACCTGCTGAAGATGGGTCACATCGTCACTGTGTGGAACCGCACCGCAGAAAAGNNNNACCTGTTCATCCAGGAGGGGGCCCGTCTGGGTCGGACTCCGGCCGAGGTCGTGTCCATGTGTGACGTCACCTTCTCCTGCGTCTCGGACCCCAAGGCCGCGAAGGACTTGGTTCTGGGCCCCAGTGGAGTTCTGCAGGGAATCCGACCCGGGAAATGCTACGTCGAAATGTCCACTGTGGACCCAGAGACGGTCACAGAGCTGTCGCAGGTAATCACGTCGCGGGGGGGGCGCTTCCTGGAGGCCCCCGTGTCCGGCAGCCAGCAGCTGTCCAATGACGGCATGCTGGTGATCCTGTCGGCAGGGGACCGGACCCTCTACGAggactgcagcagctgcttCCAGGCCATGGGCAAGACCTCCTTCTTCCTAGgagAGGTGGGGAACGCAGCCAAGATGATGCTCATCCTCAACATGGTCCAGGGCAGCTTCATGGCGACCATTGCCGAGGGGCTGACGCTGGCACAGGTCACCGGCCAATCGCAGCAGACCTTCTTAGACATCCTCTGTCAGGGCCAGATGGCAAGCACTTTCCTGGACCAGAAATGCCAAAATGTTTTGCAGGGAAACTTCAAGCCTGATTACTATTTGAAACACATTCAGAAGGACCTCAGGTTAGCCATCGCAATGGGTGACTCTGTCAATCATCCCACGCCAATGGCAGCAGCGGCCAACGAGGTCTACAAGAGAGCGAAGGCCCTGGACCAGTCGGACAACGACATGTCGGCCGTGTACAGAGCCTACATCCACTAGAGCCGCGGACACCGGCGACGCGCTGGACCATCCTCTcgactttttcttttctccatttacTCTTCTAAACGAATTCGCCCCGATTCTGCCAGCCCGGCGATCGTGataccccgcccccccacctctcccagGTCCGAGGGACACAGCGGTTCAGTGTTGACGCCTGACTTTTGCACTGACCGTGCCACCGACGCCCCGAGCGAGTGCGTCCACCCCCCCGCCGCGCTCTGTCTGCCCGCCCGCGCCGCCGCGGGGGGGAAGTAATGCAGTGTGTGAGGCTGGAGTCGGCGCCGGTGCAGAAGGTCCACCCACGATGCCCTGTGGTTTAATATGATCGGGTTTAGGATTCAGAGATTCGGTTCCGATGCATACATGTTTCCTAAAagatttgcagttttatttaacTTGCGGCATTTCGCTTTTTCCTATGAAtgtcaagaataaaaaaaaattatggaaaaaaatatatatatttgcttgtttaatattatgaaagaaaaaggcTGGAGAAGCACCAAGAAAATGCCACTGCAATGCCTTAATAgcgtccccccccccccaattaaagatgtatttatttatttaagcctCCGGAGATCCGTCTCGGCCTGGACGACACGAGAGCAGGGTGTCGTCCTGTCTTGGACGTTGAGGATATTTAATTGCCTTAAAGCGCCGTAATTTATTTCCTGTGTCTTGTACCATTATGAAGAACGGTATCGACAGGACCTGCCATCGGACAGACTGTTAATCGTTCGCGAAACCAAAACGCGTCGGCGGCAAACCGTCACTACTTTCCATAACGATGGCggctgtttgtttattgttgcgGTCGTAGCGTTCGGCACTGTTCGGTGTCTTCCTCGCCAGTTAGACCAGTGTGGTCTGCGGTTATATCCTAAACTGCAGTTGGCAAGAAATCCTCATTAAATGGCTCTATTTGCCACATATATAAGGATTGACGTTCATAATAAAGTAGCTGTACAGCAGTTTCCCGTACTTATTTTAGCTCGTTCTTTTAGGAACCACACGTTTCCTTACTTCTGCCTTAACCCTTCGTGGGTTTGAAGAATGACAGTGTTGACTGGAAGATGTCCTGATTTCTAGTAACTGAATACAGATTAAACAGTATGGAGGCAGTGGGTCACTGGGGCTCAGAACAGCAAAAGAAACCTGCATTACTTTGAGTTAGGAGATAAAGGTCACAGACAGAGCTTGCACAAGAACAATATTTTGATAAGTTTTGAATGCTTCATTTCCTggccaaaaaaagaaaagtatgaactactttttgtaattgttttatagcTGTTACCATGGTAGTAAATATTCTTTACTATAATACAAGCTGTACAATAAGCAGAGCCgtacattttaaatcctttCAAGCCGTGAGCAACCTATGCATACTGCCACATTTCACTTGGATTCGTTTCTCTTTTGCACGTGAATATCATGAGTTATCTAAATCGGTTTTACCcgttttaaagaacattttctaTTACCAAATACAGAATTTAAAGGATACTTATTTACCAAAATAGGATTTAATTGCTTGTGTATGGGTGGAGATTCTTATCCAAGACGGTGGGTGTATGAccaccattttcttttttggttataatttaatctttttaacatttgtaaatagCCTGTCGGAGTTGAAGGGGTACAATGAATTACGTTGGGGGCAAACAAGGCTTTCGTTTAAAGAAAAGGATTCTACTGAATCATTAATCATCTGTTGTCTTAATACTGTAGTTGGTTCTGTTGAGTGTTTGCCATCTAAATGTTTTCCTATATTTTATCCTGTTCTGTTATAAATGGGTTCTTAATAAGTGGCAGAAAAAAGAACAGCTTGCTGAAAATATCCAGCACTGGATAGCAAAGTTACTCATTGTTcgatatctttattttttttctgtaaaggaAATTTTGCTGTTTTGTTAAGAAATGTCTATCGTTTGTTATGtaagtgaaaatgtgtttttttctttttttttctttgtgcagTTAACAACAGCCtctcacaattaaaacaaacaaacaagg

Function

symbol description
glyr1 Predicted to enable methylated histone binding activity. Predicted to be located in nucleus. Orthologous to human GLYR1 (glyoxylate reductase 1 homolog).

NR:

description
PREDICTED: putative oxidoreductase GLYR1 isoform X1

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0005634 nucleus cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018075 True 3723 mRNA 0.49 16 902184 912776

Neighbor

gene id symbol gene type direction distance location
AMCG00018069 NA coding upstream 124894 763554 ~ 777290 (+)
AMCG00018071 NA coding upstream 141483 760423 ~ 760701 (+)
AMCG00018070 NA coding upstream 142465 746675 ~ 759719 (+)
AMCG00018068 axin1,LOC107564695 coding upstream 162901 737140 ~ 739283 (+)
AMCG00018058 NA coding upstream 230348 667954 ~ 671836 (+)
AMCG00018076 rogdi,LOC105899978,LOC107719995,LOC105899878 coding downstream 6314 919090 ~ 921114 (+)
AMCG00018081 uncx,LOC106601117,LOC106607339 coding downstream 123574 1036350 ~ 1041531 (+)
AMCG00018084 mafk coding downstream 349253 1262029 ~ 1265534 (+)
AMCG00018091 elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding downstream 596218 1508994 ~ 1511372 (+)
AMCG00018097 nudt1,8odp coding downstream 836453 1749229 ~ 1752065 (+)
G114056 NA non-coding upstream 348680 553210 ~ 553504 (+)
G114018 NA non-coding upstream 430060 468788 ~ 472124 (+)
G114205 NA non-coding downstream 250116 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 354064 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 377779 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 620699 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 951781 1864557 ~ 1865570 (+)
AMCG00018072 LOC107720077 other upstream 13151 871321 ~ 889033 (+)
G114123 NA other upstream 107394 777383 ~ 794790 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 322480 575260 ~ 579704 (+)
G114219 NA other downstream 307003 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1035065 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1060062 1972838 ~ 1973924 (+)
G114330 NA other downstream 1064228 1977004 ~ 1978727 (+)
AMCG00018106 NA other downstream 1066270 1979046 ~ 1982566 (+)

Expression


Co-expression Network