AMCG00018076 (rogdi,LOC105899978,LOC107719995,LOC105899878)


Basic Information

Item Value
gene id AMCG00018076
gene name rogdi,LOC105899978,LOC107719995,LOC105899878
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 919090 ~ 921114 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018076
tttcttgaagtgtggagcccagaactgtccacagtatccagatgagctcagtctgaacattactgaatattatctaagtctcTGAATAACCCGAGCTGCACAGATTATATGTCGGGTAAAGGAGAAAGTTGAGCTGATTGGCAGATCTAAGCTCTTTTAGTCGGGAGAAACCTTTGCGTTTTGCTCTGTGTGATACCTGTTTTAAGAGTTCGTCCTCCTCGTCCCCGCAGCTCATGGACGCGGTGATGCTGCAGCTGACCCGGGCGCGGAACCGCCTCACCACCCCGGCGACCATGACCCTGCCCGAGCTGGCCTCCAGCGGCCTGATGAAGATGTTCACGCCGCCGCTGCCGGGAGACGTGTTGGTGAATTTCTACATCAACCTGAGCAAGCTGTGCCTGACGGTGTACCAGCTGCACGTCCTGCAGCCCAACACTAACAAGaaCTTTAAACCGTCGGGGAGTTCGGTGCTGCACAACCCCGGCGCCATGTTTGAACTCAATAACCTGAAGTTCGAGGTCAGCCACGTGCACAAGGTGGAGTGCGTTGTTCCCTGGCTCAACGACACCCTGGTCTTCTTCACCATCTCTCTCCAGCTGTGCCAGCAGTTAAAGGACAAGATCTCCGTCTTCTCCAGTTACTGGAACTACAGACCCTATTAG

Function

symbol description
rogdi Predicted to be located in several cellular components, including nuclear envelope; perikaryon; and synaptic vesicle. Predicted to be part of RAVE complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Kohlschutter-Tonz syndrome. Orthologous to human ROGDI (rogdi atypical leucine zipper).

NR:

description
PREDICTED: protein rogdi homolog

GO:

id name namespace
GO:0005635 nuclear envelope cellular_component

KEGG:

id description
K24628 ROGDI; protein rogdi

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018076 True 662 mRNA 0.53 5 919090 921114

Neighbor

gene id symbol gene type direction distance location
AMCG00018075 glyr1,LOC107688117,LOC107590383,LOC107721499 coding upstream 6314 902184 ~ 912776 (+)
AMCG00018069 NA coding upstream 141800 763554 ~ 777290 (+)
AMCG00018071 NA coding upstream 158389 760423 ~ 760701 (+)
AMCG00018070 NA coding upstream 159371 746675 ~ 759719 (+)
AMCG00018068 axin1,LOC107564695 coding upstream 179807 737140 ~ 739283 (+)
AMCG00018081 uncx,LOC106601117,LOC106607339 coding downstream 115236 1036350 ~ 1041531 (+)
AMCG00018084 mafk coding downstream 340915 1262029 ~ 1265534 (+)
AMCG00018091 elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding downstream 587880 1508994 ~ 1511372 (+)
AMCG00018097 nudt1,8odp coding downstream 828115 1749229 ~ 1752065 (+)
AMCG00018096 NA coding downstream 849042 1770156 ~ 1779659 (+)
G114056 NA non-coding upstream 365586 553210 ~ 553504 (+)
G114018 NA non-coding upstream 446966 468788 ~ 472124 (+)
G114205 NA non-coding downstream 241778 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 345726 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 369441 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 612361 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 943443 1864557 ~ 1865570 (+)
AMCG00018072 LOC107720077 other upstream 30057 871321 ~ 889033 (+)
G114123 NA other upstream 124300 777383 ~ 794790 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 339386 575260 ~ 579704 (+)
G114219 NA other downstream 298665 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1026727 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1051724 1972838 ~ 1973924 (+)
G114330 NA other downstream 1055890 1977004 ~ 1978727 (+)
AMCG00018106 NA other downstream 1057932 1979046 ~ 1982566 (+)

Expression


Co-expression Network