AMCG00018081 (uncx,LOC106601117,LOC106607339)


Basic Information

Item Value
gene id AMCG00018081
gene name uncx,LOC106601117,LOC106607339
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1036350 ~ 1041531 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018081
ATGATGGACAGCCGGATACTAGAGCACCCCCATGCCCAGTTTGGAGGCTCTCTCGGTGGGATGGTGGGCTTCCCGTACCACCTCAGCCACCACCATGTCTACGAACTGGCCGGGCATCAGCTCCAGTCGGCGGCCGCGGTCCCTTTCTCCATAGACGGATTACTGAACGGATCCTGCACCGCCTCGGTGGTCAATTCAAACCCCCTCCTGCAGTCTGGATGCGGGGTTTGGTTCCAAAACCGCAGAGCTAAATggaggaaaaaggaaaacacaaagaaaggaCCGGGGCGGCCGGCGCACAACTCGCACCCGACCTCCTGCAGCGGGGAGCCCATGGACCCCGAGGAGATCGCCCGCAGGGAGCTGGAGCGcatggagaagaagaagaggaagcagGAGAGGAAGCTCTTGAGATCCCAGAACAAACTCATTTCGGGAGACCTGTTCCACACCCCGGGGTCGGACAGCGACAGTGGGGTTTCCCAGATAACGGACCATATGGACCAAGCCGCGACTATGGTCCAGTCTGACCTTGCGGGCCGAAACCAAACCGAACCAAGCTGTGACCAAAATCGCCAGAAACTACAGAGCCAAAGACATCTGGGCCAGGACGCGGGGTCGGAGCCGGACTCGTCCGACAGCAGCCAGAACTCAAACCTGTGTCCCAACAGCAGAGCCTCGGCCCTCCAGAAACTGAACCCCTTCAGCGTGGAGAGCCTGCTGTCCGACTCCACTCCTCGGCGCAAAACTCTGGATTTCCCCGCGTTGTCCAACCCGCGGCCGCTCATAGGGAAAGGGCATTTCTTACTGTACCCCATCACGCAGCCCCTTGGCTTCATCGTGCCACAGACTGCTTTAAAGACAGCGTCCAGCCCAGACTTACTCAACCCGGGACAGAGAGGCTTGACCGCGGACTCCAGCCCCCAGCAACCCAGCTTTTCCAACTCGAACCCCGGACACAGTAGTAAGAGCAACAGCGCCAACAATAACAGCTCTAGCACGACTAACAGTGCGaccaacaaagaaaataactcTAGTTCTTCAGAAAGCATCTCAGTCCAAACGACATATCCCAGAACCGGTTCCGCACAGTCGCCGGGCGTCTACAGCGAACCTCCCCCTCCCCAGACAGACTCGCCCCCTGCCCGGCCCAAATCTCCCCACCCGGACACGCAGGACAATTGCGCACAGGACGACTCGGGATGTCCCGAAACAACGAAAACAAACTGTCCCCCAGAAACTAGCACAGACTGTGAAGATGTTGATATGGACtaa

Function

symbol description
uncx Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; forebrain neural rod; olfactory placode; segmental plate; and spinal cord neural tube. Orthologous to human UNCX (UNC homeobox).

NR:

description
PREDICTED: homeobox protein unc-4 homolog

GO: NA

KEGG:

id description
K09328 UNC4; homeobox protein Unc-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018081 True 1275 mRNA 0.58 2 1036350 1041531

Neighbor

gene id symbol gene type direction distance location
AMCG00018076 rogdi,LOC105899978,LOC107719995,LOC105899878 coding upstream 115236 919090 ~ 921114 (+)
AMCG00018075 glyr1,LOC107688117,LOC107590383,LOC107721499 coding upstream 123574 902184 ~ 912776 (+)
AMCG00018069 NA coding upstream 259060 763554 ~ 777290 (+)
AMCG00018071 NA coding upstream 275649 760423 ~ 760701 (+)
AMCG00018070 NA coding upstream 276631 746675 ~ 759719 (+)
AMCG00018084 mafk coding downstream 220498 1262029 ~ 1265534 (+)
AMCG00018091 elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding downstream 467463 1508994 ~ 1511372 (+)
AMCG00018097 nudt1,8odp coding downstream 707698 1749229 ~ 1752065 (+)
AMCG00018096 NA coding downstream 728625 1770156 ~ 1779659 (+)
AMCG00018104 NA coding downstream 754871 1796402 ~ 1802228 (+)
G114056 NA non-coding upstream 482846 553210 ~ 553504 (+)
G114018 NA non-coding upstream 564226 468788 ~ 472124 (+)
G114205 NA non-coding downstream 121361 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 225309 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 249024 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 491944 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 823026 1864557 ~ 1865570 (+)
AMCG00018072 LOC107720077 other upstream 147317 871321 ~ 889033 (+)
G114123 NA other upstream 241560 777383 ~ 794790 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 456646 575260 ~ 579704 (+)
G114219 NA other downstream 178248 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 906310 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 931307 1972838 ~ 1973924 (+)
G114330 NA other downstream 935473 1977004 ~ 1978727 (+)
AMCG00018106 NA other downstream 937515 1979046 ~ 1982566 (+)

Expression


Co-expression Network