AMCG00018082


Basic Information

Item Value
gene id AMCG00018082
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1001676 ~ 1012365 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018082
TTTATTTCctattgttaattgttttgatgcTGTTAATATATCTCGCCAATCTCTAGCtgatatatatatcatcagccTACATCAgtctactgctggatgaaggctcttGATCTTTAGCTTCTCTTTCCACAGCACACctgcaatgttttttattgcatcTTCCTACCTTTTATGTGGTTGACTTAAACTCTTGGGACgtatgatgtcacatattttatttgttcgcagaaccaatatgtttttgtttcatctaGCTCATGTCTATGAGCCATGCCATGTGCATTATATtgatgcatgtatgtatttttaaaaacgtGTTGTGCCACTACAGTGTTGCACATCGTCCAGTATATttaacaaatgttaaaacagcTGTGGCCATCGAGTGACGCAATGCCCGTGATGACATGGCGTTTCTGCGTCGCTGAGTCACGACCTCCCTCTGTGGAGAATTCTGGAACTCTCCGGGAGCTGCGCCATGACGTCACCTCCGTCATCAGGGTGCGCCGCGACGCCGGGAGGAAGTGGGAGGAGCCAGAGGCGAGCACATAAGAGCGCGTCGCGCAGGAGGCGTCATGATCGCTGGCGGACGGGCTGTTGTTATTGTGCTGACAGCCGCGGCCGCGGAACAACACCACCGTCCCACACCACCGTCCTCCGCACCGGGAGCCGGGAGAACAAGCTCCGCGTCGTCCAGAAGCCCCTTTCCGgcccagctgacctccgCTCGTCTCTGCGGCGCCATGGAGTTCCCGGACCTGGGCGCGCATTGCTCCGAGAGGACCTGCAAGCGCCTGGATTTCCTTCCCATGAAGTGCGATGCCTGCCAGGATATCTTCTGTAAGGACCACATCACTTATGTAAACCACAGGTGCACTTCAGCGTACAAAAAGGATGTCCAGGTCCCGGTCTGCCCCCTGTGCAACACCCCGATCCCAGTGAAGAGAGGAGAGATGCCGGATATTAAAGTGGGGGAGCACATCGACCGAGACTGTAAATCAGACCCAGctcagaggaagaggaagatttttacaAACAAGTGCTCGAAGGGAGGCTGCAAACAGAAAGAGATGATCAAGGTCACGTGTGACCAGTGCCACCTGAACTACTGTCTCAAGCACAGACACCCTCTGGACCACGAGTGCAAGACTGAGGGCGGCCCCCTCTCCAAGGCTGGACACGCTGCCCTGATGAGAACCCGTGGGAGCGGCTCCAGCTCTGGTTCCAGCTCCTCGGGTGCCAAAGGCGCATCCAGGTCCGTCCCCAATGGGCTGAGCGGCACGAGAGCCCAGCAGAGCAGCTCTACCCGCAGCGCAGCCGCCGCGGCCCCCGCACCCCCTCCAGCCCCCCGGCCGGTCCCACAGGCGGCGTCTCTGCAGGCGGGTCTGAGCGAGGAGCAGGCCCTGCAGAGAGCCCTGGAGATGTCCCTGGCCGAGTCGGCGAGAAGCACACAGGAAGCGCTGAGTCCGCAGGAGCAGGAGGACCTGGCCTTGGCTCAGGCTCTGGCCGCCAGTGAGGAGGAGTTCCAGCGTCAGCAGCAGCTCAGACAGGCACAGGGGACGACGGCTCTGCTAGCGGGCTTTGACAATCACGCTGTGCGGATCAGGAAGGCACCGGGGTCCGAGTTCACCATGGTCTGA

Function

GO: NA

KEGG:

id description
K24685 ZFAND2; AN1-type zinc finger protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018082 True 1640 mRNA 0.57 10 1001676 1012365

Neighbor

gene id symbol gene type direction distance location
AMCG00018079 galr2b,LOC107674614,LOC107564701,LOC107753547,LOC108433115,LOC107703387,LOC108257258 coding downstream 22834 971766 ~ 978842 (-)
AMCG00018080 rogdi,LOC105899978 coding downstream 82292 915840 ~ 919384 (-)
AMCG00018078 NA coding downstream 100008 890097 ~ 901668 (-)
AMCG00018073 si:dkeyp-72e1.9,LOC107601283 coding downstream 160754 802720 ~ 840922 (-)
AMCG00018066 LOC107682913 coding downstream 333765 662249 ~ 667911 (-)
AMCG00018083 NA coding upstream 155300 1167665 ~ 1184993 (-)
AMCG00018085 NA coding upstream 188374 1200739 ~ 1203173 (-)
AMCG00018086 NA coding upstream 195158 1207523 ~ 1208541 (-)
AMCG00018087 ints1 coding upstream 204928 1217293 ~ 1237035 (-)
AMCG00018088 NA coding upstream 224885 1237250 ~ 1248772 (-)
G114183 NA non-coding downstream 88035 913231 ~ 913641 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding downstream 97833 902320 ~ 903843 (-)
G114166 ppl non-coding downstream 112588 879311 ~ 889088 (-)
G114044 NA non-coding downstream 502158 498327 ~ 499518 (-)
G114030 NA non-coding downstream 529552 468917 ~ 472124 (-)
G114213 NA non-coding upstream 150525 1162890 ~ 1166493 (-)
G114264 NA non-coding upstream 255928 1268293 ~ 1268816 (-)
G114273 NA non-coding upstream 500628 1512993 ~ 1513642 (-)
G114286 NA non-coding upstream 521091 1533456 ~ 1534985 (-)
G114304 NA non-coding upstream 739531 1751896 ~ 1878375 (-)
AMCG00018077 NA other downstream 74937 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 201205 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 559252 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 972784 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 994541 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1269335 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 1596780 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 1624136 2636501 ~ 2647811 (-)

Expression


Co-expression Network