AMCG00018087 (ints1)


Basic Information

Item Value
gene id AMCG00018087
gene name ints1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1217293 ~ 1237035 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018087
CTTCCGCTTCCTCTCGGCAGGCGTTGAGCGCTGAGGTAAACACTGGACACTTTCAATGAGAAGtttaatgttCACTTGTGAACATCTGGCGCGGACGTGACATCGATGAGACAATGAACCGGCCGAAACCGACGACCATCCGGCGCCCGAGCAGCGCCGCCAAAGCGTCAGGTCACGCTCCTCCCGGGGATTTTATCGCCCTGGGCTCCAAGAGTCAGGCCAGTGAGCCCAAAGCGCCGGTGGTCCTGCTGAAGCCGGCCTCCACTGGGCTGCCCCCCGACCGCAAGAGAGAGGCGGCGTCGGCGCTGCCCTCGGCCTCGGGCCTGTCCGGCCTCACCAAGCGCCCCAAGCTCTCCTCCACCCCTCCGCTGAGCGCCCTGAGCCGACTGACCGATGTGGCCGCCGTGGACAAAAGGGCGATTTCTCCCTCCATCAAGGAGCCCTCCGTTGTGCCGATAGAAGTCCCCCCTGCCGTGCTGCTGGACGAGATCGAGTCGGCCGAGCAGGATGGCAACGACGACCGCATCGAGGGCATCCTGTGCGGGGCGGTGAAGCAGCTCAAAATCAACCGAGCCAAACCCGACATCACCTTGTACCTAAGCCTCATGTTCCTGGCCAAGATCAAGCCCAACGTCTTCGCCACGGAGGGCGTCATCGAGGCGTTGTGTAGCTTGCTGCGCCGAGATGCATCCATCAACTTCAAAGCCAAGGGCAACAGCCTGGTCTCGGTGCTGGCCTGCAACCTGCTGATGGCCGCGTACGAAGAAGACGAAAACTGGCCTGAGATCTTTGTGAAAGTGCACATTGAGGACTCTCTGGGGGAACGGATCTGGGTGGACAGTCCTCACTGCAAGACATTCGTGGACAACATCCAGACAGCGTTCACCACAAAGATGCCCCCCAAGAGCATGCTGCTGCAGGCTGACACGGGCCGCTCCGGAGGGGACCTCAGCGCAGGCAGCAGCCCTCACCCATCCACCCCCGATGAGGACGACAGCCAGACGGAGCTGCTGATCGCCGAGGAGAAGCTGAGCCCCGAGGACGAGGGTCAGGTCATGCCCAGGTACGAGGAGCTGGCAGAGAGCGTGGAGGACTATGTGCTGGACGTCCTGAGGGACCAGCTGAACCGCCGGCAGCCCATGGACAACGTGTCCAGGAACTTGCTGAGGCTGCTGACCGCCACCTGCGGCTACAAGGAGGTGCGGCTCATGGCGGTGCAGCGGCTAGAGATGTGGCTGCAGAACCCCAAGCTGACCCGTCCCGCCCAGGACCTGCTGATGTCTCTGTGTATGAACTGCAGCACCCACGGGGCCGAAGATATGGAGGTCATGTCCAACCTCATCAAGATCCGCCTGAAGCCCAAAGTCCTGCTGAACCACTACATGCTGTGTGTCAGGGAGCTGCTGAACGCGCACAGGGACAACCTGGGCACCATGGTCAAGCTGGTGATCTTCAATGAGCTGTCGAACGCCAGGAACCCCAACAACATGCAGGTCCTCCACACCGTGCTGCAGCACAGCCCCGAGCAGGCGCCCAAGTTCCTGGCCATGGTGTTCCAAGACCTGCTGACCAACAAGGACGATTACCTGCGGGCGTCACGGGCCCTGCTCAGGGAGATCATCAAGCAGACCAAGCACGAGATCAACTTCCAGTCCTTCTGCCTGGGGCTGATGCAGGAGCGCAAGGAGGCCACCTACGTCGACATGGAGTTCAAAGAGCGCTTTGTCATCCAGGTGACTGACCTGCTGACGGTCTCCATGATGCTGGGAATCACGGCTCAGGTCAAGGAGGCCGGCATTGCCTGGGACAAGGGCGAGAAGAAGAATCTGGAGGTCCTGCGCTCGTTCCAGAACCAGATTGCAGCGATCCAGAGGGATGCGGTCTGGTGGCTCCACACGGTTGTTCCCACCATCAGCAAAGTGGGGCCCAAGGACTACGTTCACTGCCTGCACAAGGTCCTGTTCACCGAGCAGCCCGAGACCTACTACAAGTGGGACAACTGGCCCCCCGAGAGCGACCGAAACTTCTTCCTGCGGCTGTGCTCGGAGGTTCCCCTGCTCGAGGACACGCTGATGCGCATCCTGGTGATCGGCCTGTCCCGTGACCTGCCCCTGGGCCCAGCCGACGCCATGGAGCTGGCCGACCACCTGGTGAAGAGGGCCGCCGGGGTCCAGTCCGATGGTAACTCCGCCGCTCCTCCAAATCGTAGGGAACGTTCTTCCCCAGGAGCCCTGTGTTTCCCACAGACCCCCACAGGCCACTCCACACGCGTGATGCACCCCCCGTTGCTCACACCTGAGACGAGACCCCCTGACTCCTGCCGCAACCATGACCCGCTCTCTCTTGACCTGTCCTCAGATCTCGAGGTGCTGAAGGTGGAGAGGATCCAGCTGATCGATGCCGTCCTCAACCTGTGCACATACCACCACCCCGAGAACATCCAGCTGCCCCCCGGGTACCAGCCCCCCAACCTGGCCATCTCCACACTCTACTGGAAGGcctggctgctgctgctcgTGGTGGCTGCCTTTAACCCACAGAAGATTGGTCTGGCTGCCTGGGACGGCTACCCCACTCTGAAGATGCTCATGGAGATGGTGATGACCAACAACTACTCCTACCCGCCCTGCACCGTGGCCGACGAGGAGACCAAGACGGAGATGATCAACCGTGAGCTGCAGATCTCGCAGCGAGAGAAGCAGGAGATCCTGGCCTTCGAGAGCCACCTGGCGGCCGCCTCCACCAAGCAGACCATCACGGAGAGCAACAGCCTCCTGCTGTCCCAGCTGACCAGCCTGGACCCCCAGGGACCGCCCCGCCGACCTCCCCCCCACATCCAGGAGCAGGTGAAGAGCCTGAACCAGACCCTGCGCTTGGGACACCTGCTCTGTCGGAGCCGCAGCCCGGACTTCCTCCTCAACATCATCCAGAGACAGGCCTCCTCCCAGTCCATGCCCTGGCTAGCCGACCTGGTCCAGTCGAGCGAGGGGTCCTTGGACGTGCTGCCCGTGCAGTGCCTGTGCGAGTTCCTGCTGCACGATGCGGCCGACGACTCCTCCCCGGTCGAGGatgaggaggaaggagagagcaagGAGCAGAGAGCCAAGAAAAGACAGAGACTGCAGAAACAACGGCAGCTCCTCGGACGCCTACAGGACCTCCTTCTGGGCCCTAAAGCAGACGAGCAGACCACCTGTGAAGTCCTGGACTACTTCCTGCGCCGCCTCagctcctcccaggtggcctcACGGGTCCTGGCCATGAAGGGCCTTTCTCTGGTTCTGACGGAGGGCGGTCTGCGGGACGGGGAGGAGCGGGACCAGCCCATGGAGGAGGACTCCCGCGACGCTGAGCTGCTGCCTGGCTACCAGTGGCTGCTGCAGGACCTGCCCAAGCTGCCCCTGTTCGACAGCGTGCGCCGCATGACATCCAGCGCCCTGCAGCAGGCCATCCACATGGAGACGGACCCCCAGACCATCAGTGCCTACCTCATCTACCTCTCCCAGCATGCCCCGGTGGAGGAGCAGGCGCTGCACAACGACCTGGCCCTGGATGTGGCCCGGCTCATCGTGGAGCGCTCCACCATCATGAACCACCTCTTCGCCAAGCACTCCTACCGGCCCGAGTCGGACGCCGTGCTGTCCGCCCTCATCGCCGTCTTCTCCAAGTACATCCGCCGGATGAGGCAGACCAAGGAGGGCGAGGACCTGTACAGCTGGTCGGAGTCCCAGGACCAGGTCTTCCTGCGCTGGACCACGGGGGAGACAGCTACCATGCACATCCTGGTGGTCCACGCCATGGTCATCCTGCTGACCCTCGGGCCGCCCAAAGGCGACAGCGATTTCCACAGCCTGCTGGACATCTGGTTCCCCGAGAAGAAGCCCCTGCCCACCGCCTTCCTGGTGGACACGTCCGAGGAGGCCCTGCTGCTGCCCGATTGGCTGAAGCTGAGGATGATCCGGTCAGAGGTCTCCCGATTGGTTGACGCCGCCCTGCAGGACCTGGAGCCCCAGCAGCTGCTGCTGTTCGTGCAGTCCTTCGGGATCCCCGTGTCCAGCATGAGCAAGCTGCTGCAGTACCTGGACCAGGTGGTGTCCCACGACCCGCAGACCCTGGAGCAGAACATCATGGACAAGAACTACATGGCTCACCTGGTGGAGGTGCAGCACGAGAGAGGGGCCACTGGGGGCCACACCTTCCACTCCCTGCTCAGCGCCTCGCTGCCCCCCCGCAGAGACAGCGCCGAGCTTAACCGTGCCAAGGTGAACATGGAGGCGCCTCACGGGCCAGTGAGGACCCGGGTGGCCAATCAGATCCCGGTCATCGGGCCGGACGACGACCTGGCTGGCATGTTCCTGCAGCTCTTCCCCCTGAACGTGGACCCGCGGTGGCCCGGCTCGAACCCCCGGCAGGTGTCCCTGGCGCTGCAGCAGGCGCTGGCGCAGGAGCTGGCCCGGGTGCGCCAGGGGGATGCGCAGGTGACGGGTGTGGCGGTGCGTCTCCTGCAGGCTGTCTCCGCCCTGCTGAACTCGGCGCACGGGGGGGCCCTGGTCCTGGCCATGCAGCGCAACCACGCCCTGGCCTGCCCCCTGCTGCGCCAGCTCTACCACTACCAGCGCTGCGTGCTCCAGGATATGTCCTTCTCCTCGCTGTTCTTCAAGGCCGTCCTGCAGATGCTCACCTGGCTGGAGAAGCCAGGCCTGGAGACCGGACCGCTGAACGCGCTGCTCAAGTCCTTCGCCGCACAGTACTCCCTCAAGCACCGGCTCGGCGATGTGAGGACCGGGTTCCTGCACCTGGCCGAGACTCTGGCCTACCACCGTGACTCGGAGGTGGCGACGGCGGCCTCCAATCCCGCCACGGGCCCAGTTGCCATGGTGaactctctcctcctccaggagAGCGAAGAGACTCCGATGAAAGAGGAGGCGGGTGGCAGCCTGGAAGTGACGAAGACGGGCTCCTCCTCGGGGCTGCTGGTCGATTGGCTGGAGCTGCTCGACCCGGAAGTGACCTCCGTGTGCCCAGAGCTGCAGCACAGACTGCTGTTTGCCTGGAACAAGGGTAAAGGACCCCTGGGGGCCCAGATCCCTTCATACAGACCGTATCTGCTGGCGCTGCTGACGCACCAGTCCAACTGGACCACCCTGCACCAGTGCATCAGCATCCTGCTCGGCAAACACCGGGAGCTCAGGCTGGACCCATCCTCCTCGCTGGACTTCCTGTGGGCCTGCATCCACATCCCGCGCATCTGGCAGGGCCGCGACCAGAAGACACCGCAGAAGCGCACTGAGGAGTTCGTGCTGCGCCTGACGCCCGCGCAGCTCATCAGCCTGGTGGACCTGATCCTGTCAGAGTCCGAGGCCAGCGGCCGTGCCCCCCCGCAGGGCCGCACCGCGCTGGACGAGGCCTCCTGCTCGCTCATCCAGGCGCGCCTGCCCCTGCTGCACAGCTGCTGCCACGGGGACCTGGACAGTGTGAAGCAGGTGTCCGAGTACCTGATCGACTGCATCAAGAAGTGGGGCGAGAGCGTGATGAGCAAGAGATGCCAGAACCTCCTGCTCCAGATCTACCTGCAGGTCCCCGAGGTGATCCAGTGCGTCGCGCTGCCCGACGCCACGCTGAAGAGCGAGGGCACGGCCGACGGCAGCACCTGCAGGCTGGACATGCTGGTGCACCGGCTCATCACCCTGCTGGCCGACACCGGCGACTCCAGATCCTCTGAGAACCGCATACACCTGCCCATGGTGGCCGCGCTGCTGCACGGCCGCATCCACCTGAACTTCCAGGAGTTCCGGCAGCAGAACCACCTGGCACTGTTCACCCACGTGCTGGCcgtgctggagctgctgcagccCCTGGTCTTCCACACCGAGCACCAGATGGCGCTGCAGGACTCGCTGCTGTCCTTCATCCAGGTCCTGCAGAACTTCCGGAAGTCGTCCCGGCAGCTGTCGACCTTCATCAGCAAGTTCGTCCAGTTCATCCAGAAGTACATCACCCACGACGCTGCGGCGGCCGTCCCCTTCCTGCAGAGACACTCTGACATCCTCCAGGGTCTGTCCTCGGAAAACCCGGACCTGGTGCAGCTGAAGTCCCTGCTGGCTGGCCTGACGCTGCCCGTGCGGAGCGACTCCCGCGAGGCGGCGGCCGACGACAGAGAGGACGAATCCTCCGCCGGGTCGCTGCCCCTGGTCAACATCTCGGCCTCGGCTCCGCTGACCGCCTCCGACATGACCAAGTACCTGAAGAACATCGCCCGGGGGGAGGCGGTGGAAGATATCCTGGAGGTTCTGAGCGAGAACGACCTGCAGAGACTCATGAGCTCCCCGGAGGAGCTGTGCCGCAACATGGCCTTCAGCCTGGCCCTGCGCTGCGTCCAGAACAACCCCAGTATGGCATCTGAATTCCTGCCCACGTTCATGTACTGCCTGGGCAGCGGGAACTTCGACGTGGTGCAGACGGCGCTGAGGAACCTGCCCGAGTACATCGACACCAGCTCCATGATCTCTGAGTCCATGAAGGTCCTGCACATGGAGGCCACGACATGA

Function

symbol description
ints1 Predicted to be involved in U2 snRNA 3'-end processing. Predicted to be part of integrator complex. Is expressed in brain and eye. Used to study cataract and neurodevelopmental disorder with cataracts, poor growth, and dysmorphic facies. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with cataracts, poor growth, and dysmorphic facies. Orthologous to human INTS1 (integrator complex subunit 1).

NR:

description
PREDICTED: integrator complex subunit 1 isoform X4

GO: NA

KEGG:

id description
K13138 INTS1; integrator complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018087 True 6551 mRNA 0.64 46 1217293 1237035

Neighbor

gene id symbol gene type direction distance location
AMCG00018086 NA coding downstream 8752 1207523 ~ 1208541 (-)
AMCG00018085 NA coding downstream 14120 1200739 ~ 1203173 (-)
AMCG00018083 NA coding downstream 32300 1167665 ~ 1184993 (-)
AMCG00018082 NA coding downstream 204928 1001676 ~ 1012365 (-)
AMCG00018079 galr2b,LOC107674614,LOC107564701,LOC107753547,LOC108433115,LOC107703387,LOC108257258 coding downstream 238451 971766 ~ 978842 (-)
AMCG00018088 NA coding upstream 215 1237250 ~ 1248772 (-)
AMCG00018090 tmem184a coding upstream 35548 1272583 ~ 1291830 (-)
AMCG00018089 NA coding upstream 58531 1295566 ~ 1297934 (-)
AMCG00018092 NA coding upstream 299932 1536967 ~ 1537730 (-)
AMCG00018094 mad1l1,LOC107722950,LOC107714125 coding upstream 389719 1626754 ~ 1627168 (-)
G114213 NA non-coding downstream 50800 1162890 ~ 1166493 (-)
G114183 NA non-coding downstream 303652 913231 ~ 913641 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding downstream 313450 902320 ~ 903843 (-)
G114166 ppl non-coding downstream 328205 879311 ~ 889088 (-)
G114044 NA non-coding downstream 717775 498327 ~ 499518 (-)
G114264 NA non-coding upstream 31258 1268293 ~ 1268816 (-)
G114273 NA non-coding upstream 275958 1512993 ~ 1513642 (-)
G114286 NA non-coding upstream 296421 1533456 ~ 1534985 (-)
G114304 NA non-coding upstream 514861 1751896 ~ 1878375 (-)
G114363 NA non-coding upstream 746617 1983652 ~ 1984149 (-)
AMCG00018077 NA other downstream 290554 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 416822 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 774869 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 748114 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 769871 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1044665 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 1372110 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 1399466 2636501 ~ 2647811 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location