AMCG00018088


Basic Information

Item Value
gene id AMCG00018088
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1237250 ~ 1248772 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018088
ATGGTGTCCTACAAGCTGCTCACCCCAGAGGATGTGTACTTCTCCGCCCCCCCGCCGGCGGAGGACAGCACCGAGGAGAAGCCGGCGGACGCCCCTCTGTGTCCGGAGAAGAAGACCTGCTCCACGTCCACCGCCTTCGTGGGCCTGGGCACCTGCCTGTTCGTGGTGGGCTGCGTGTGGCTGATCGGCACGGTGTTCTGGCTGAAGGACCCAGGCAGCCAGCTCCCCCACCGGCTGCTGCCTCCCACGGCACAGGCTCCCCCCAACAAGAGCTGCGGTGCCGTCCCCGAGCCCCGGCGCTTCGACTGCTACCCCGAGAGAGGCGTGGTGGTGACGCAGGAGCTGTGCGAGGCCAGGAACTGCTGCTTCATCCAAGTGAGCAAGAGCCCCGGCGCTAAGAGCGGGGTGCCCTGGTGTTTCTACCCACCTGGCTTCCCCAGCTACACCCTGGACAGTTTGAATGAGACCGAAATGGGGTACACGGGGCAGCTGACGAAGAGGGTGAAGACGTACTACCCCAAAGACATCGAGACCCTGCAGCTCAGTGTCACGTTTGAGACCGATTCCAGGTTGCACGTAAAAATCACAGACCCATCCAGTCTTCGCTTTGAGGTCCCCATCTCTGTCCCCAATGCCACGCAGAAGGCCACGAACCCGGCCTACACAGTGGAGTTCTCCAAAGAGCCTTTTGGGTTGATAGTCAAGAGGACTTCAACAGGAACTGTGCTAATAAACACCACCGTGGCCCCGCTGTTCTACGCCGACCAGTTCCTGCAGCTGTCCTCGTCCCTGGCCTCTCGGTTCGTGTATGGGCTGGGGGAGCACCGCGCCGGCTTCCTGCACAGCGTGGACTGGACCACCCTGACGATGTGGGCCAGAGACGTGCCCCCCACGGAACTGACTAACCTGTATGGAGTTCATCCCTTCTACCTGGGCATGGAGCCAGGTGGCTCAGCCCACGGGGTTTTCCTGCTCAACAGCAACGCTATGGATGTTGTGCTGCAGCCCGCCCCTGCCCTGACCTGGCGCACGATTGGTGGAGTCTTGGACATCTATGTCTTCCTGGGTCCCGACCCCAGCTCTGTGGTCCAGCAGTACCTGGAGGTCGTAGGACTTCCTGCAATGCCCATCTATTGGGCCCTCGGGTTCCACCTCTGCCGCTGGGGGTACAAGACCAGTAATGGGACCTGGGAGGTGGTCAAGGCCATGAGGAACTATGGGATACCTCAGGACGTCCAGTGGAATGACATCGACTACATGGATGGCTTTCGGGATTTCACTTTTGACCCCAACAGTTTCCCCACCCTCCCAGACATGGTGAAGGACCTGCATAGGAACGGGCAGCGCTACGTCATGATCCTGGACCCTGGCATCAGCAGCACTCAGCCCGCCGGCTCGTACTGGCCTTACGATGAAGGGATGAAGCGGGGAATCTTCATCAAGGACTTCAGTGGCAACACATTGATCGGAAAGGTTTGGCCTGGACTGACTGCGTACCCCGATTTCTCAGACCCCGACGCGCACCAGTGGTGGTTAGAAAACCTCCAGCAGTTCTACGCCAAGGTCCCGTTCGACGGCCTCTGGATCGTAAgtgcccccccccgcccccgcgACCCGCCGATGCCGCTTCTGTCCCCGGCTGTGACGGCAGAAGACATGAACGAGCCCTCCAACTTCCTGGACGGAGCGCTCGGCGGCTGCCCCTCCAGCGACCTGGAAGACCCCCCGTACACCCCAGGTCAGTGTTTGTTCCATTTGAACCGTTTCCGTGCGCTGAAGAAGATCGTGGGGAAGCGCCCCTTTGTGATCTCGCGCTCCACGTTCGCCGGCCAGGGACGCTACTCCGGCCACTGGCTGGGAGACAACAAGAGCCGCTGGAAGGACCTCATCATGTCCGTGCCAGGCATCCTGAACTTCAACCTGCTGGGGATCCCACTGGTGGGGGCGGACATCTGTGGCTTCGGCGGCAGCACGGAGGAGGAGCTGTGTGTGCGCTGGACCCAGCTGGGGGCTTTCTACCCCTTCTCTCGCAACCACAACTCCATCGACGAGCAGGCCCAGGACCCGACCACGTTCAGCCCGCTGGCCCGCACGGCCATGAAGGAGGTGCTGCTGCTGCGCTACTCGCTGTTCCCACTGCTCTACACGCTGTTCCACCACGCGCACCTGGAGGGACGCACCGTGGCGAGACCCCTGCTCTTTGAGTTTCCTGAGGACATGCAGACGTACTCCATCGACCGGCAGTTCCTGTGGGGGAGCTCTCTCCTCGTGACCCCGGTTTTGGACCCTGGTGTCGACTATGTCTCGGGATACTTCCCCAAGGGGCTGTGGTATGATTTCTACACGGGTGTTGCGGTGAGAAGCGGGGGGGAGGACGTGAAGCTCTTGGCCCCCCTGGACAAGATCAACCTCCACGTCCGAGAGGGCGCCGTCGTTCCCACCCAGACTCCCAACACTACACTGTGGATCAGCACCGGCAACCCCCTCCGCCTGATCGTTGCGCTGCGGGACGACGGCTCGGCCACGGGGGACCTGTTCTGGGACGACGGGGAGAGCATCGACACCTACGAGACGGGCCATTCAGTTCTCCTCCAGGGGTGTGATATCGAGTCCCTGAGACTCTTATTCCCGCCCCCTCAGCGCAGTGTTCGAACCGACGAGTCTGATCGCTGTAGTTTGAAACCGCAAAAGACGCCGTGCGGCCGTGTCCCCCGGGGGCTGCGCTCGCAAACTGTTTTTGCAATTCGCTATGAAGAGAAAACAGACCTGTCCCATAAAACGTTTACTTCTACAGTCCTTCATAGCCACGTAGAGGCTACCTACATTACAGTGGAGACCGTGTCCTTCTTCGGGGTGAGAGAAGAGCCGTCCAACGTTACTGTGAACTCAAAAGACGTCCCGTTTACCTACAGGACCAACCAGGTTTTAACTGTGACCGATTTGGGTCTCAATCTCAGCCAGGGCTTCACGATCCGCTGGACATAAAGAGAGGACGACCCTTCAGAGTGTGAGCTCTTACCAGCTGCTGACACTGGACTTTAGCTGCTGCTGCCGCCTCTGTGATTCACACGGCTTTGCTTTTAGGTTCTCTCATGTAAAAGCGTCTGCTCATGTAAGGTACGGGTACTGAGAAAAGTGTACGTTTGTAAACCGCAAAAGAGGAACACTGTCAATCAACAGTGAGGAGAACTCACTGCATACGATACCGCTGGACAGCAGGTCTGTTTATTGGATAATAAAACTTCCAGAAGTCTAAACTGTACAAAAACACAAGTCGGAAAACCCTGTTTAGGATAAGATCActaatttaatatgtatttaaaatgcaattacgTATTTCAGTTTCTTCATTCTTTAATATCAGTATCTGGTATCCACCTTCATTATTACTACAAGATTACTTGCACTAGTAAAAGTTGTCTGATGGGACAGCTGAGGGAAAAGCTGcactgaatgtaaaatgttctgTATCTTCAGGaccatgttttgcttttgttcagCATGTGGCGCTTATGCTGACAAAAATGCAATGAGCTCTAAGGGGAAAAGTATTGAAGTACAAGATGTATCTATACTTCCTTTATTTCTGGCCTTAGATTATAATTGCATTGTGCCTTACAAGCACCTAGCAGTTCATCTGGCTTACATTAACAAGTGTGAGGGCACTGTTTATTGCTAAAATCAACATGAAATTGCTTTCTTATGATTGCAATTCCTTAGTGATCTTGTTTAGCAATAAATGTTCAATGTGCCGGCTCTGTGACGTGGCCGTAGCTGTATTGAAACTGCTTTAATGTGGGAATTGAAGCTGATGAAAACATGACGATCTGCCCAAAGAATCAGTGTTGTTCCTGGTTCTGATAACCTCCACTGTCGTCTTTAATCCAGTCGGCTCAGGATTGGAACGGGTCTGAAAAAGGTTATGCTTGGCGTAGTCtgattgtttattgtttttacaaattaaagaatatatttCTATTGTTGATTGCGTTCTCTCTCCGGCCATGTGAGAATTGgtctaataaattaatattaaaactatGAATAGTGCAGACACCTCAAATCTCACACACAGGTTGTGAGATTCTCGCCTCAGGACTTCTCACTCTCACACGCTTACACGCTTACTCCATGAAATGTGACGCACAGCACACAAACCATAGACTGTTTCACAAGCCCCCCTCCACTCATCAGCAGCTCCACACACCTGCCGACCCCCCCACTGTCGACAGTATTACGCCCCTGACTTGGTGTTCACATAATCTCATACATTGGAGTTCCCAAAACCCTAAACATTAATGAACATCTTTCACACAGttataataattgtgttaatgGCCTATATAGCCAAGAGGAACtccattatattatataagatCTACATCTTTTGCATACTGTGCCCTTGCGTATAATACAAATCTTCAGTATACTGCAGCAGAGAAAGGAAGATTTATTTGGAAGAAATGACACTGTCTGACTCTACAGCTGTTACAAGCAGAGGACTGCACCCTGGCATGTTTAATCACCTTTACTTGCAATAAAATGATTCTATATGAAGTCCCaatctacattttgttttaattgtgaaacgCAGATGCAATAAGAACTGCTACAACAATGGCTGTTTATTTGTTAATCTTTGATTtaaaactttgaaatgtaaatcatctgtatttaaattgagTTGTGGTTTGTTTCGTTTGTGTGTAGTCAAGCCTGTGCAATAAACTTTGTTGATTCAA

Function

GO: NA

KEGG:

id description
K12316 GAA; lysosomal alpha-glucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018088 True 4742 mRNA 0.53 21 1237250 1248772

Neighbor

gene id symbol gene type direction distance location
AMCG00018087 ints1 coding downstream 215 1217293 ~ 1237035 (-)
AMCG00018086 NA coding downstream 28709 1207523 ~ 1208541 (-)
AMCG00018085 NA coding downstream 34077 1200739 ~ 1203173 (-)
AMCG00018083 NA coding downstream 52257 1167665 ~ 1184993 (-)
AMCG00018082 NA coding downstream 224885 1001676 ~ 1012365 (-)
AMCG00018090 tmem184a coding upstream 23811 1272583 ~ 1291830 (-)
AMCG00018089 NA coding upstream 46794 1295566 ~ 1297934 (-)
AMCG00018092 NA coding upstream 288195 1536967 ~ 1537730 (-)
AMCG00018094 mad1l1,LOC107722950,LOC107714125 coding upstream 377982 1626754 ~ 1627168 (-)
AMCG00018095 NA coding upstream 390899 1639671 ~ 1663159 (-)
G114213 NA non-coding downstream 70757 1162890 ~ 1166493 (-)
G114183 NA non-coding downstream 323609 913231 ~ 913641 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding downstream 333407 902320 ~ 903843 (-)
G114166 ppl non-coding downstream 348162 879311 ~ 889088 (-)
G114044 NA non-coding downstream 737732 498327 ~ 499518 (-)
G114264 NA non-coding upstream 19521 1268293 ~ 1268816 (-)
G114273 NA non-coding upstream 264221 1512993 ~ 1513642 (-)
G114286 NA non-coding upstream 284684 1533456 ~ 1534985 (-)
G114304 NA non-coding upstream 503124 1751896 ~ 1878375 (-)
G114363 NA non-coding upstream 734880 1983652 ~ 1984149 (-)
AMCG00018077 NA other downstream 310511 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 436779 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 794826 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 736377 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 758134 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1032928 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 1360373 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 1387729 2636501 ~ 2647811 (-)

Expression


Co-expression Network