AMCG00018089


Basic Information

Item Value
gene id AMCG00018089
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1295566 ~ 1297934 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018089
ATGCATGACGTCACCGCCGGCGCTCGCTTCCCCACGCGCTGCAGTGACGTGCAGAGGGCGCGCGCGGGACTGCATGCTCCGCATCGGCTGCACTTCCGGCCCCGCGGCCCTCAGTCCCGGGCGTGTCTGTACCAGCCCCGAGGTCGCGTAGTGTTCGCAGCCGACGAGGAGCCGTGTTTGGTCGCCGAGCCCATCATCCGGTCGAAGCAGAGGGAGCAGGTGATCAATGGCGTCTCCACCCAGGTGGTCTGCACGGCCTTCAGCAACTACACCTTCGTGGTCCTCACGCAGTTCGGCAAGATCGGCTCGCTGGTCTCCCTCACTCCAGACGCCTCCTGCAGTGACGTGAGCAAACCGCTGTTCACCACCAAGGTGCTGCTGGGGAAGGACGAGGCCCTCACCCACGTGTGTGCAAAGAACCTGGTGACGTTCGTGTCCCAGGAGGCCGGAAACAAGCCGGTTCTGCTGGGCCTGGCCCTCAAAGACAGCACCGTCGAGGCCATCAAAGCCATGAAAGAAGTGATCAAAAGCTGCCAAGTCTGGTAGCGGCGGAGGCTGCAGACTCCACGGCTGCAGCGAGAGATAGAACCGGCCTGTTTGGTGTTGCCAACAAGGCCGCGGATGAGTCACTGCGGGAGGACCTGTGTGGAGTGGGTGGCGGGGTGTGCAACTTAAACTGAAATGCTAAttcattcaatttgttttttcttcctgcagCCCTAGGAAAATCAGAATAGACATCTTGTCGTAGCTTGGTGTGCCGTGCGGGTGAGAGATTGGATTGTGAAGCTgctttgtttaacaaaacacaagagcCGCAAGCACCCGAGTGCTGGTGTTGTGATTCAGTGCTGGTATATTGGCAGAAAGCCTTAGAAGGGATTGGTATTGAAAAGAACGATCGGAGTAGGTGATCACAGCCACACGGCTGAATATTGCGCTTTTGTTTCCCGGTGGCCGAGTGTCGGGATCAGTCGTGACGATGCTGTACTCTGGCTGATGACAGATTTATGATTTTGGCAACTTGATGACATTCTTTACTCACCTGTCATCAGAAGGAAACACTTTCAAGTACTGTATAAACATTGGCACTGTAGAGATCCCTGAGCATGAACTTCCTTCAACAGAATGTAGTGCAGGGGGTTTCCAAACTGATATTTAAACGACATTTCAGTTCGGTTAAAACTGTTTCCTGTACACACTTATTTGGTGGATATAATCTTACATCATCTGACTTGTGTTGTAATGCTGTGATCttaacacattacatttattttgtaagcaataaaggagtttttttttcaaa

Function

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K11877 PSMG3, PAC3; proteasome assembly chaperone 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018089 True 1306 mRNA 0.53 4 1295566 1297934

Neighbor

gene id symbol gene type direction distance location
AMCG00018090 tmem184a coding downstream 3736 1272583 ~ 1291830 (-)
AMCG00018088 NA coding downstream 46794 1237250 ~ 1248772 (-)
AMCG00018087 ints1 coding downstream 58531 1217293 ~ 1237035 (-)
AMCG00018086 NA coding downstream 87025 1207523 ~ 1208541 (-)
AMCG00018085 NA coding downstream 92393 1200739 ~ 1203173 (-)
AMCG00018092 NA coding upstream 239033 1536967 ~ 1537730 (-)
AMCG00018094 mad1l1,LOC107722950,LOC107714125 coding upstream 328820 1626754 ~ 1627168 (-)
AMCG00018095 NA coding upstream 341737 1639671 ~ 1663159 (-)
AMCG00018093 NA coding upstream 379900 1677834 ~ 1678345 (-)
AMCG00018100 NA coding upstream 441917 1739851 ~ 1745900 (-)
G114264 NA non-coding downstream 26750 1268293 ~ 1268816 (-)
G114213 NA non-coding downstream 129073 1162890 ~ 1166493 (-)
G114183 NA non-coding downstream 381925 913231 ~ 913641 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding downstream 391723 902320 ~ 903843 (-)
G114166 ppl non-coding downstream 406478 879311 ~ 889088 (-)
G114273 NA non-coding upstream 215059 1512993 ~ 1513642 (-)
G114286 NA non-coding upstream 235522 1533456 ~ 1534985 (-)
G114304 NA non-coding upstream 453962 1751896 ~ 1878375 (-)
G114363 NA non-coding upstream 685718 1983652 ~ 1984149 (-)
G114456 NA non-coding upstream 1070496 2368430 ~ 2375735 (-)
AMCG00018077 NA other downstream 368827 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 495095 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 853142 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 687215 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 708972 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 983766 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 1311211 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 1338567 2636501 ~ 2647811 (-)

Expression


Co-expression Network