AMCG00018090 (tmem184a)


Basic Information

Item Value
gene id AMCG00018090
gene name tmem184a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1272583 ~ 1291830 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018090
ATGGCCGCTGGCACTCCGGCTCCGGGTCCATCATCTGACCAGGACCTCCGATCGCAGCTCCAGTCCTCTGTGCTGACGATATTCAGCAACGCGACGCTCCTGGTCTCCGGGAACTCCACCATCATCGAGGATCACCTCTTCCTGAACACGGCGCCGGCCCAGGCCCTGTCCGGCATCTTCGTGTGGTCGGCCCTGTTGATCACCTGTCACCAGATCTACATGCACCTGCGCTCGTACTCCATGCCCAACGAGCAGCGCTACATCATCCGCATTCTCTTCATCGTGCCCATCTACGCTTCCGACTCCTGGCTCAGCCTCCTGTTCATCAGCAACGACCAGTACTATGTCTACTTTGACTCCGTACGGGACTGCTACGAAGCCTTCGTCATTTACAACTTCCTCAGCCTGTCTTTTGAGTACCTGGGCGGTGAGAGTGCGATCATGTCGGAGATCAGAGGGAAACCGATTCAGTCGAGTTGCATGTATGGCACCTGCTGTCTTGCAGGAATGAGTTACTCAATTGGGTTTCTGCGCTTCTGCAAACAGGCCACCCTGCAGTTCTGCGTCATTAAACCCCTGATGGCCATCATCACCATCCTGCTGCAGGCGTTCGGCAAATACCACGACGGGGACTTCAGCGTGGACGGCGGATACCTCTACATCACCATCATCTACAACTTCTCCGTCAGCATGGCGCTCTACGCCCTCTTCCTCTTCTACTTTGCCACCAGCGACCTGCTGCGCCCCTACGAGCCCGTGCTAAAGTTCCTCACCATCAAGTCCGTCATCTTCCTCTCCTTTTGGCAAGGCATGCTGCTGGCCATCCTGGAGCGCTGCGGGGTCCTCCCCAAAGCCCTGTACATCGACGGGCACGAGGTGGGCGCCGGGACGGTGGCGGCCGGCTGGCAGAACTTCATCATCTGCATAGAGATGTTCTTCGCCGCTATCGCGCTCCGCTACGCCTTCACCTACACAGTGTACCAGGAGAAGAAGAACGAAGTGCAAGAGAACGTCGCTCAGATGCAGAGCATCTCCAGCGGCCTGAAGGAGACCATCAGCCCCCACGACATGGTCCAGGACGCCATCCACAACTTCTCCCCAGCCTACCAGCAGTACACACAGCAGTCCACGCAGGAGGTGGTCCAGCCCAGCCAGAACGGCAAGGCAGGGTCCGGTACTGGCCAGAAGAGGCCCAAGAAAAACGACAAACTGATGCTGATCACCTCAGACGATGAGTTTTAG

Function

symbol description
tmem184a Acts upstream of or within regulation of angiogenesis. Predicted to be located in membrane. Predicted to be active in early endosome membrane. Predicted to be integral component of membrane. Is expressed in gut; hypothalamus; pronephric duct; sensory system; and yolk syncytial layer. Orthologous to human TMEM184A (transmembrane protein 184A).

NR:

description
PREDICTED: transmembrane protein 184A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018090 True 1242 mRNA 0.58 9 1272583 1291830

Neighbor

gene id symbol gene type direction distance location
AMCG00018088 NA coding downstream 23811 1237250 ~ 1248772 (-)
AMCG00018087 ints1 coding downstream 35548 1217293 ~ 1237035 (-)
AMCG00018086 NA coding downstream 64042 1207523 ~ 1208541 (-)
AMCG00018085 NA coding downstream 69410 1200739 ~ 1203173 (-)
AMCG00018083 NA coding downstream 87590 1167665 ~ 1184993 (-)
AMCG00018089 NA coding upstream 3736 1295566 ~ 1297934 (-)
AMCG00018092 NA coding upstream 245137 1536967 ~ 1537730 (-)
AMCG00018094 mad1l1,LOC107722950,LOC107714125 coding upstream 334924 1626754 ~ 1627168 (-)
AMCG00018095 NA coding upstream 347841 1639671 ~ 1663159 (-)
AMCG00018093 NA coding upstream 386004 1677834 ~ 1678345 (-)
G114264 NA non-coding downstream 3767 1268293 ~ 1268816 (-)
G114213 NA non-coding downstream 106090 1162890 ~ 1166493 (-)
G114183 NA non-coding downstream 358942 913231 ~ 913641 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding downstream 368740 902320 ~ 903843 (-)
G114166 ppl non-coding downstream 383495 879311 ~ 889088 (-)
G114273 NA non-coding upstream 221163 1512993 ~ 1513642 (-)
G114286 NA non-coding upstream 241626 1533456 ~ 1534985 (-)
G114304 NA non-coding upstream 460066 1751896 ~ 1878375 (-)
G114363 NA non-coding upstream 691822 1983652 ~ 1984149 (-)
G114456 NA non-coding upstream 1076600 2368430 ~ 2375735 (-)
AMCG00018077 NA other downstream 345844 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 472112 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 830159 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 693319 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 715076 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 989870 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 1317315 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 1344671 2636501 ~ 2647811 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025645 tmem184a coding NC_007114.7 CM002887.2 42923275 ~ 42957609 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_02212324_02222103 TMEM184B, TMEM184B.L, TMEM184BA coding CI01000063 null 2212222 ~ 2223666 (-)