AMCG00018098


Basic Information

Item Value
gene id AMCG00018098
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1746150 ~ 1748581 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018098
GCCCCGGGTCCTGTAGAACTTTTCTTAGTCCCTTATTACACCGTTAAGCCGCATTCTTCCACACTGTCTTTTCCTTATTGGGctcgtatttgcatattatgGGTTTATTATGTAAAACCTGTTTAATTACTCTTGGGCCGCTCTGTGCATTGCGTGTCTATGGCTCTCGGGCGGGGGGATGTTTGGGTTTCTGTGCACTCACGTGATCGGAAGCGTAAGTGCGTCACTTCCTGGCGGAGCCTGTATGCGGAAGCAGCATGGCTCTGTTATTCTGAATCAAACGGGCTGTTCCGCTGTCTTCGATCAGTATTGAGCTGCTTTCCGGAACAGGAGATGTCCTGGGTGTCCGTGCTGCGCAGGGGCGTGCACTCCTCTCCCCGCTGCTGGAAGAAGGGGAAGACCGGCGCGGAGCAGCGCTGGGTGGCCAGGCAGATGAGCGACCCCTTCGTGCGGGCGGCCAGGGCGCAGAACTACCGCTGCCGCAGCGCCTTCAAGCTGCTGGAGATCGACGATAAGCACCGGCTCCTGCGGCCGGGCCTGAGCGTGGTGGACTGCGGCGCGGCGCCCGGGGCCTGGAGCCAGGTGGCCGTGGAGAAAGTCAACTCGTCCGGAGCAGACCCCGGTGCCCCGGTGGGCTTCGTGGCCGGCGTCGACCTGCTCCGAATCCCCCCTCTGGATGGCGCGCACTTCCTCTCCACCAGGGACCTGACGGACCCCGACACCCAGACGCTCCTGCTGGAGCTGCTCCCCGCCGGGGGGCTGGACGTCATCCTGAGCGACATGGCCCCCAACGCCAGCGGCTTCCGGGAGCTGGACCACGACCGGCTGATCGGCATGTGTCTCTCGGTGGCGGACTTCGCCGAGCGGGCCCTGCGTCCGGGGGGAGCGCTGCTGTGCAAGTACTGGGACGGGAGGAGAGCGCGGCAGCTACAGGCCCGGCTGGCGCGGTCTTTCCAGGAAGTCCGGACGATAAAGCCTCACGCCAGCAGGAAGGAGTCGGCTGAGCTTTTTTTCCTGGCGAAACATCACAAAAAGCAATGATTGGCggtgttttactttattttttgtgttagtGTTGTCTTTTAagccttttttttgtatttatgtttcctTGGAGTTTGTTAACTCCACCTCTGAATGAAGTTGGAAAGGGTGGAGTAAATGAAACAACAGAAATAAGGTTCACTTTGAAATGTTGTTCCCTTGTAAGTTTTCATGAGAGACAATGGTTTGTTTACAATCAATAAAACCTACTGTGTGTTAATAAGTACCAGCATTGCCTTGACGAGTGGGCTGCTGTTTTATCTGCGACACAACACATGTTTGTGATTTGGATCGCACAGATTCCTTCTGTGGTcaaataaaatactacacaaCCTGAATGCAGGATTTGTACTGGTGCCTCCCACAGATTTGTTTCATGGAACATCTGGTGCGACACAGGATTAACAGTCCATTATGTGTAACAGTAGAGCAGAAACATGACATATCTTTCTTCTGGGCAGTGAGAATAGACATATTTGCAGTATAAAATGGTGTTAAATAGTGCTCTTCTTtaatacagatttaataaatATCCTGCTTTGACCTGAAGGCCGTCTGTCCCAGGAATCCAGGATATTAGTAAACCAGTGGTCAGAGTAATATTCATCTCATGACCAGTATTTCTGTACATGATATCCTGATTTCTGGTCACTGATGCTGTGTGTAGTGTTTATTAACTGTGTAATGTacagtattcaaatgtattgttttgaaattaactgtgaaataaacctggatcaataaacatttatttagaaa

Function

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K02427 rlmE, rrmJ, ftsJ; 23S rRNA (uridine2552-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018098 True 1803 mRNA 0.51 3 1746150 1748581

Neighbor

gene id symbol gene type direction distance location
AMCG00018100 NA coding downstream 250 1739851 ~ 1745900 (-)
AMCG00018093 NA coding downstream 67805 1677834 ~ 1678345 (-)
AMCG00018095 NA coding downstream 82991 1639671 ~ 1663159 (-)
AMCG00018094 mad1l1,LOC107722950,LOC107714125 coding downstream 118982 1626754 ~ 1627168 (-)
AMCG00018092 NA coding downstream 208420 1536967 ~ 1537730 (-)
AMCG00018101 NA coding upstream 164 1748745 ~ 1749020 (-)
AMCG00018099 NA coding upstream 8083 1756664 ~ 1769934 (-)
AMCG00018103 lfng,LOC103392616,LOC106537334,LOC101169038 coding upstream 111932 1860513 ~ 1874199 (-)
AMCG00018108 adap1,LOC106601846,LOC105005621 coding upstream 199408 1947989 ~ 1970490 (-)
AMCG00018107 LOC103024569,LOC104933647,LOC105905426,LOC108424881 coding upstream 226616 1975197 ~ 1978819 (-)
G114286 NA non-coding downstream 211165 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 232508 1512993 ~ 1513642 (-)
G114264 NA non-coding downstream 477334 1268293 ~ 1268816 (-)
G114213 NA non-coding downstream 579657 1162890 ~ 1166493 (-)
G114183 NA non-coding downstream 832509 913231 ~ 913641 (-)
G114304 NA non-coding upstream 3315 1751896 ~ 1878375 (-)
G114363 NA non-coding upstream 235071 1983652 ~ 1984149 (-)
G114456 NA non-coding upstream 619849 2368430 ~ 2375735 (-)
G114554 NA non-coding upstream 919879 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 1247454 2996035 ~ 2998258 (-)
AMCG00018077 NA other downstream 819411 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 945679 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 1303726 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 236568 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 258325 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 533119 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 860564 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 887920 2636501 ~ 2647811 (-)

Expression


Co-expression Network