AMCG00018106


Basic Information

Item Value
gene id AMCG00018106
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1979046 ~ 1982566 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018106
ATGGGGCGGCTGGACGAGTCTGCCAAGCGGAGGATCGTGGAGCTGCGTCGCTCCGGGCTGAGCTTCCGCAAGATCAAGGCCATACTGGAGCTGGAGCACATCATGGTTTCCACACAGACCATCTACCTGTTCctcaagaagaagaagaaggtgaAGCTGGAGGCGGGGGAGCCATGCTCGCGGCcgggggcaggggcaggggcaggggcaggggcaggggcaggggcggggccgggggcaggggcagggccggggccggggccggggccgGGGGCAGGCGGGGGCTCCAGCTCAGGCTGGGCGGACCAGCAGCTGTGGAGCCTGATGCAGGAGGAGGCCTCGTCCAGGTTCGTCAGTGCCCAGGGGCCGGGGCCGGGGCAGGGGCCGCTCCCTGTGTGCCCCACAGACAGTCCAGGACAGCCCTCTGGGCCGAGCCATCCCCACGCGGCCAGCAAGGAGCGACTATCCAGGGAGGAGGGAATTCGGATTGTCAGCGTCACCTCCCTGTCCCAGAGCGCCGCACACACAGACGCTCACAGACCAGAGGCTGTAGGGCAGAAACCCGGCCCAGTGGGAGCCCAGTCCACCAACCAAGCTCTGCCCGGCTGCAGCGTGGTGCCCAATCCCGGAGGCCCTGTGCCTCCCGTCCCCCTGCCTAGAGTGCCTCCTGGAGGGGGCGTCCGCAGACGAGCCCACCCGACCCCACCCAGGAACCCTGTCCTGATCGCCCGCAAGAGACTGCTGGACAAGGCCCTGCTCCACAAAGTCCGGGTCAGGGAGACAGTTACTCTGGGCAGCCAGCAGGAGGCTCTGTTCCCCAGGAGAGACCAGCCTTCTGTCCCCAGCTCTCCTCTCAGAAAGGTGCCTGCAGTGCAGTGTCCATCCGCTCTGGGCAGGCTTCACACAGCGAAGAAGAGTTCGGGAGGGCAGGCTGCCCCGGTTGACCCCAGCCGGCTGCTCCATCGACGGGGGTGTCCTCCCAACTCCTCCCCGCAGCCACGCCTCCAGACTCAGACTCTGCCCCGCGCCGGCTGTGGCACGAGCTCGAACCTCAGCACGGCTCCAGCCACTCTGGGCCCGGGTCCCACAGGCCCACCGTGCCGGACCAACTCGGTCAACGGCAGCTCGAACGCTGCGGTGGGCCGCGGTGGGCCCTCGGGGAGAGGTGCCAGCCGCGGCCTGCAGTGCCCCGGCCCGGCCCTGGGGACGGGGATCAGTGGCGCCATCCAGGGGCAGCTGGAGGGCTTGAGCGGAGAGCTGCGGACCCTTGGCAGGGCGGTGCGGATGCTGGCGGAGCAGCAGGGCCGCGTGGAGAGGGAGCAGGCCGCGCAGACCCAGATACAGCGGCAGATTCTCAGCACCTTGCAGGCGCTGGCTGCCTCCCTGGTCCCAGCaccccctcctccaccaccgCCACCGTCCGTAACCAGCACAGACAGCCCGGCGCCGGCACACGCGCCGTACACCCCCTTCAACCAGGACACCTACCAGCCCACCAGCCACTACAAGCTGGCCAATCCCACCGCTGCCACCTGCAGTCCCCGTCTGAGCCCGCCCAGTCCGAGTGGCTACCAGAACTCGGGCTCCGGCCTTCTCGGCACCACACAACACTACTACCCCCCGGTCAGCGCCGACTCCCGCCTCCTGGACCCCCCCCAGCGCCCGTCCGACAGCCACTCCGACTCTGCCGACTCCCAGTTTAACGTCCTAAAGGTGGAGATTCTGTGA
>TU143173
gCGACCACCCAGTTGGGAAACGGGGAAGCGCTGTCGCCGTGTCCCACAATCCCCCGCTCCGAGCATCGGGCCGGCGAGCCGCGGTAACGGGAAGCCGAAGAGACGGGTTGGCCTGACCTGGGGCTGGTAGCTCCCCCACACCTGGGCAGGAGCAGGAGGTGTGACACTGGAGGTTCTGCTGGTGGGGACGGTCCGGTGCGGACGCTCTAGAAGGCCATGGGGCGGCTGGACGAGTCTGCCAAGCGGAGGATCGTGGAGCTGCGTCGCTCCGGGCTGAGCTTCCGCAAGATCAAGGCCATACTGGAGCTGGAGCACATCATGGTTTCCACACAGACCATCTACCTGTTCctcaagaagaagaagaaggtgaAGCTGGAGGCGGGGGAGCCATGCTCGCGGCcgggggcagg
>TU143174
gCGACCACCCAGTTGGGAAACGGGGAAGCGCTGTCGCCGTGTCCCACAATCCCCCGCTCCGAGCATCGGGCCGGCGAGCCGCGGTAACGGGAAGCCGAAGGTACCCGAATAAAACGCCATTCGCGCGTCTCGGCTTATTTCTGCTGTTTTCGGTCAGTCGGtcggttgttgttgttgtttttcttcatgcaagtgatcagaagaaaaaaagcgATTCACGTGTTTTAATAGGAAAACGGCGAACTTCACATCCAGCTCCCCAGCGCGGCTGTCAGTGTCAACAGACCGACTTAGTGAACTCGCCCCGGGCTGGCGTCTCGGACAGGCGGGCGCAGGGGTGAGGCAGCGCCGGGACGCCGCTCTCTTGTTATTGCTGTTCTGGACGGGGACAGAAAATGTCACCGACCCATCAGATGCACACCGTCTGGAAATGATCATATCGTTTTAAAACTTGAGACGGGTTGGCCTGACCTGGGGCTGGTAGCTCCCCCACACCTGGGCAGGAGCAGGAGGTGTGACACTGGAGGTTCTGCTGGTGGGGACGGTCCGGTGCGGACGCTCTAGAAGGCCATGGGGCGGCTGGACGAGTCTGCCAAGCGGAGGATCGTGGAGCTGCGTCGCTCCGGGCTGAGCTTCCGCAAGATCAAGGCCATACTGGAGCTGGAGCACATCATGGTTTCCACACAGACCATCTACCTGTTCctcaagaagaagaagaaggtgaAGCTGGAGGCGGGGGAGCCATGCTCGCGGCcgggggcagg
>TU143175
gCGACCACCCAGTTGGGAAACGGGGAAGCGCTGTCGCCGTGTCCCACAATCCCCCGCTCCGAGCATCGGGCCGGCGAGCCGCGGTAACGGGAAGCCGAAGGTACCCGAATAAAACGCCATTCGCGCGTCTCGGCTTATTTCTGCTGTTTTCGGTCAGTCGGtcggttgttgttgttgtttttcttcatgcaagtgatcagaagaaaaaaagcgATTCACGTGTTTTAATAGGAAAACGGCGAACTTCACATCCAGCTCCCCAGCGCGGCTGTCAGTGTCAACAGACCGACTTAGTGAACTCGCCCCGGGCTGGCGTCTCGGACAGGCGGGCGCAGGGAGACGGGTTGGCCTGACCTGGGGCTGGTAGCTCCCCCACACCTGGGCAGGAGCAGGAGGTGTGACACTGGAGGTTCTGCTGGTGGGGACGGTCCGGTGCGGACGCTCTAGAAGGCCATGGGGCGGCTGGACGAGTCTGCCAAGCGGAGGATCGTGGAGCTGCGTCGCTCCGGGCTGAGCTTCCGCAAGATCAAGGCCATACTGGAGCTGGAGCACATCATGGTTTCCACACAGACCATCTACCTGTTCctcaagaagaagaagaaggtgaAGCTGGAGGCGGGGGAGCCATGCTCGCGGCcgggggcagg
>TU143176
gCGACCACCCAGTTGGGAAACGGGGAAGCGCTGTCGCCGTGTCCCACAATCCCCCGCTCCGAGCATCGGGCCGGCGAGCCGCGGTAACGGGAAGCCGAAGGAAAACGGCGAACTTCACATCCAGCTCCCCAGCGCGGCTGTCAGTGTCAACAGACCGACTTAGTGAACTCGCCCCGGGCTGGCGTCTCGGACAGGCGGGCGCAGGGAGACGGGTTGGCCTGACCTGGGGCTGGTAGCTCCCCCACACCTGGGCAGGAGCAGGAGGTGTGACACTGGAGGTTCTGCTGGTGGGGACGGTCCGGTGCGGACGCTCTAGAAGGCCATGGGGCGGCTGGACGAGTCTGCCAAGCGGAGGATCGTGGAGCTGCGTCGCTCCGGGCTGAGCTTCCGCAAGATCAAGGCCATACTGGAGCTGGAGCACATCATGGTTTCCACACAGACCATCTACCTGTTCctcaagaagaagaagaaggtgaAGCTGGAGGCGGGGGAGCCATGCTCGCGGCcgggggcagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018106 True 1728 mRNA 0.69 4 1980186 1982566
TU143173 False 410 TUCP 0.65 2 1979046 1980379
TU143174 False 764 TUCP 0.59 2 1979046 1980379
TU143175 False 647 TUCP 0.61 2 1979046 1980379
TU143176 False 516 TUCP 0.65 3 1979046 1980379

Neighbor

gene id symbol gene type direction distance location
AMCG00018102 ttyh3,LOC106607330,LOC106601124 coding upstream 132136 1811435 ~ 1846910 (+)
AMCG00018104 NA coding upstream 176818 1796402 ~ 1802228 (+)
AMCG00018096 NA coding upstream 199387 1770156 ~ 1779659 (+)
AMCG00018097 nudt1,8odp coding upstream 226981 1749229 ~ 1752065 (+)
AMCG00018091 elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding upstream 467674 1508994 ~ 1511372 (+)
AMCG00018115 NA coding downstream 97618 2080184 ~ 2095126 (+)
AMCG00018114 NA coding downstream 112989 2095555 ~ 2104782 (+)
AMCG00018116 NA coding downstream 134049 2116615 ~ 2118790 (+)
AMCG00018121 NA coding downstream 217869 2200435 ~ 2203330 (+)
AMCG00018120 LOC106601835,LOC107695711 coding downstream 228943 2211509 ~ 2212924 (+)
G114326 NA non-coding upstream 8637 1969780 ~ 1970409 (+)
G114323 NA non-coding upstream 25782 1952874 ~ 1953264 (+)
G114322 NA non-coding upstream 27447 1951215 ~ 1951599 (+)
G114321 NA non-coding upstream 28546 1950261 ~ 1950500 (+)
G114299 NA non-coding upstream 113476 1864557 ~ 1865570 (+)
G114332 NA non-coding downstream 1085 1983651 ~ 1984150 (+)
G114346 NA non-coding downstream 24340 2006906 ~ 2021630 (+)
G114359 NA non-coding downstream 66005 2048571 ~ 2050177 (+)
G114484 NA non-coding downstream 427911 2410477 ~ 2412789 (+)
G114485 NA non-coding downstream 434241 2416807 ~ 2417796 (+)
G114330 NA other upstream 319 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 5122 1972838 ~ 1973924 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other upstream 29453 1947841 ~ 1949593 (+)
G114219 NA other upstream 758830 1219779 ~ 1220216 (+)
AMCG00018072 LOC107720077 other upstream 1090013 871321 ~ 889033 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other downstream 265287 2247853 ~ 2266775 (+)
G114518 NA other downstream 508747 2491313 ~ 2568938 (+)
G114551 NA other downstream 658280 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 2203844 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2612367 4594933 ~ 4604105 (+)

Expression


Co-expression Network