AMCG00018108 (adap1,LOC106601846,LOC105005621)


Basic Information

Item Value
gene id AMCG00018108
gene name adap1,LOC106601846,LOC105005621
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1947989 ~ 1970490 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018108
ACACCATCGAATGGACGCGTTTGTTTGCGACACAGGAGTGTTTCAAGCTGCTGGATTTGCACAGGCTTGCGGTTCCTCTGTGCGGGGAGGAAGAAGTGACCACTGGAGGTCTCGCTTGCTGAGCGCAGCGCGAACACGGAAaaggtgcagagagagagagagagagagagagagagagagagagcaggagcgGGTCACTGGAGGGAGCTCTGCAGCCGCCGCCTCTCATGCATTTCTCAAGACAATGAAGTGAAGCGCTGAacctccactctctctctccagtgcaTCCGTATCTGATTGGTCTTTGCCTTGAGCTCAACATCAAGACAACTTGAACCAAAACCGGTGCGCTACACCCCCCACCCGAGCGAGCATGGCCGGGGAGCAGGACAAGAACAAGCGGGCTCTGCAGGAGCTGCTGGGCAGACCCGGCAACGGCGCCTGCGTGGACTGCGGGGCTGCAGgtCCGGACTGGGCCTCGTTCACGCTGGGCGTGTTCATCTGCCAGAACTGCTCCGCCATCCACAGGAACATCCCCCACATCAGCAAAGTGAAGTCCGTGCTGCTGGACGCCTGGCAGACCGCTGAAGTTGAGTTCATGGCCACCGTGGGAAACCGCGCGGCTCAGGCTCAATATGAGCAGAAGGTGCCCCCGTTCTATTACAAGCCGACGTTTGCCGACGCCCAAATCCTACGGGAGCAGTGGATCCGGGCCCGCTACGAGAGGAACGAGTTTGTGCATGTCGAGAAGCAGGAGCCCTATTCTGCAGGATACAGAGAAGGGTTTCTGTGGAAACGAGGCCGAGACAATGGACAGTTTTTAAGCAGAAAATTCATCCTGTCCGAGCGTGAGGGGGCCTTGAAGTACTTCAACAAAAATGACGCCAGGGAGCCGAAGGCCTTCATGAAGATCGAGAGCCTGAACGCCACCTTCCTGCCGTCCAAAATTGGAAACGCCAACGGGCTGCAGATCACCTACCTGAAGGACAACAGCACCAGGAACATCTTCGTGTACCACGAGGACGGAAAGGAAATTGTCGACTGGTTCAACGCCATCAGAGCTGCCCGTTTCCACTACTTACAAGTGGCGTTTCCTGGGGCTAGCGATGCGGACctgGTGACGAAACTGACCAGAAACTTCCTGAAAGAGGGTTACATGGAGAAAACCGGTCCAAAGCACACAGAGGGCTTTAAGAAGAGATGGTTCACGATGGATGACAGAAGATTAATGTACTTCAAAGATCCCTTGGACGCCTACGCTCGCGGGGAAGTGTTCATCGGGAGCAAAGAGAACAACTACACGGTGCTGGCCGGCCTCCCGCCCTCCACGCAGGGGCAGCACTGGCAGTTCGGCATCACCATCGTCACTCCGGACAGGAAGTTCCTTTTCGCCTGCGAGACGGAGCTGGACCAGCGCGCCTGGATCGCTGCTTTCCAGAAAGTCATCAACCGGCCGATGCTCCCACAGGAGTACGCAGTGGAGGCGCACTTTAAACACAAACCCTGAGGAGTCGGGGGAGAGGACGGCCAGAGACGCCCCTCGGACCGGGCCGGAGACGACAGCTCGTCTGCGGAGCCGCTGTGGGGAAGACGgactcttttttttgtttacgaTGCTGGAGAAAACGGACCGAcgatttcatttaaatgaagttcaattaaattaaatctgtataaAGGCTCCAGGCATCGGCCGAGGGAGGGGTTGGCTGCTCTTCAGAgggaatgggggtgggggggcactaCTGGAGCCTGCGTGGACCCTCCCCCCCGCCTTCCCTTGCAAAACACACCCCCTCAGTCTGTGCCAACGTGGTCCACTCACGTACTGTACCTCCACCGTGGCTGTTGTTAAAATAGTACTTTAATTAATGTCGTCTAATGCAATTGGTGTCAGTTGAAAGTGATGTGTAACAAGCTATTAGCTGTCATAGCGTTTGCCTAAAAGCCTAGATACATTAATAGCGGTGTGAACACTGGAGAACATTAACCTACTACACAGGGTGGAGAGCGTGGTATTTATTGTGTCTGATATTTGTACataatcaggttttattttgctcAGGCCTGTGACCTTTTAATCTAGTGTGGGACTGTGAATTTCTTTTGTCTGACCGTTGCTAAACACAAACTCCATCGGCAAGCGCTCACATCTGGCCAGCTGTGTCCAGACCTGATGCGGGACTTCGCTGCAGGATGGACCAGAGGGTCCCGGCCTTCTGACACGCACTTGAACACTAGGACGGCCTCTTGCAGCTGGAATGCACGCATTGTTCTTAACAATCGAGACGgtctgtgttaaataaaaaacaatcctaCCCTG

Function

symbol description
adap1 Enables GTPase activator activity. Involved in regulation of GTPase activity. Located in cytosol; nucleus; and plasma membrane.

NR:

description
PREDICTED: arf-GAP with dual PH domain-containing protein 1

GO: NA

KEGG:

id description
K23781 ADAP, CENTA; Arf-GAP with dual PH domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018108 True 2323 mRNA 0.54 11 1947989 1970490

Neighbor

gene id symbol gene type direction distance location
AMCG00018103 lfng,LOC103392616,LOC106537334,LOC101169038 coding downstream 73790 1860513 ~ 1874199 (-)
AMCG00018099 NA coding downstream 178055 1756664 ~ 1769934 (-)
AMCG00018101 NA coding downstream 198969 1748745 ~ 1749020 (-)
AMCG00018098 NA coding downstream 199408 1746150 ~ 1748581 (-)
AMCG00018100 NA coding downstream 202089 1739851 ~ 1745900 (-)
AMCG00018107 LOC103024569,LOC104933647,LOC105905426,LOC108424881 coding upstream 4707 1975197 ~ 1978819 (-)
AMCG00018110 LOC107683020 coding upstream 62233 2032723 ~ 2046992 (-)
AMCG00018109 NA coding upstream 97156 2067646 ~ 2068026 (-)
AMCG00018112 NA coding upstream 102063 2072553 ~ 2081057 (-)
AMCG00018118 NA coding upstream 135115 2105605 ~ 2110667 (-)
G114304 NA non-coding downstream 69614 1751896 ~ 1878375 (-)
G114286 NA non-coding downstream 413004 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 434347 1512993 ~ 1513642 (-)
G114264 NA non-coding downstream 679173 1268293 ~ 1268816 (-)
G114213 NA non-coding downstream 781496 1162890 ~ 1166493 (-)
G114363 NA non-coding upstream 13162 1983652 ~ 1984149 (-)
G114456 NA non-coding upstream 397940 2368430 ~ 2375735 (-)
G114554 NA non-coding upstream 697970 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 1025545 2996035 ~ 2998258 (-)
G114681 NA non-coding upstream 1106551 3077041 ~ 3077760 (-)
AMCG00018077 NA other downstream 1021250 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 1147518 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 1505565 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 14659 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 36416 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 311210 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 638655 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 666011 2636501 ~ 2647811 (-)

Expression


Co-expression Network