AMCG00018110 (LOC107683020)


Basic Information

Item Value
gene id AMCG00018110
gene name LOC107683020
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2032723 ~ 2046992 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018110
ATGCCTGCGTGTCTCTCCTCAGTGCTCCACTGTCGGTGTCGCAAGTGCTTCTCCCTGCCGGCCAAGAAGAGGGTCCGGAAGCGGGCGCCGGCCCTGACCCTTCTCAGCCTGCCCGAGGAGGTGCTGCTATGTGTGCTGAAGTGCCTGCCGGCCCAGGACCTGCCGTCTGTCCGAGCGGTGCACCCCCAGCTGAGGGACATCATCGACGGCCACAGCAGCGTGTGGGCCAGGGAGTCggcttccctctctctgtctctctctcgctcacgccgctctcctctctccccggCAGCGTCCCTGAGCGATGAGGGTCGGGCGGAGGTGTGCGGGGTCAAGGCCTCCCGCTTCTTCAGCCTGGCGGAGAGTCAGCGGCCCCTGGCGGACCCCTTCGTCTGGGTGTTCATCCGGCCGCCCTGGTCCCCTTCGGGCAGCTGCTGCAAGGCCGTGGTGTTCGAGAGGCTGAAGGCCGAGTGCCAGTCCCACCCGGAGAAGAGAGGGTCCCTGCTGCACTGCCTGGCCCGCGTCCTGCAGCTGTTTGACGATGAGGAGAAGCACCGCGAGGCCCTGCTCATGCTGGAGGAGTCGTCCCGGCACGGCTGTCTGCAGAGCTCCTACCTGCTGTGGGAGGTCAAGCGCATGGCAGCGACGGCTGACCCCGGCCGCTATCTCCAGTGCCTCCGGACGCTCAGGGACTACGCTGCTAAGGGCTGCTGGGAGGCACAGCTGGCTCTGGCCAAGGCGTGTGGCAACGGGAATCAGCTGGGCCTGGAGCCGAAGGCCAGCAGCGAACTGGCGGCACAGGTGTTCCAGTCCTCCAGCCCCCTCCACCGGCACGGTGTGGCCACCCTGCAGAAGGGCATGAATGACACCATGAGGTACATCCTGGTGGACTGGCTAGTGGAGGTGACCACCATGAAAGACTTCTCCAGTCAGTCGCTGCATGTCACGGTCAACTGTGTGGACCGCTACCTCATGCTGCACTCGGTGCCAAAGGTCCGGCTGCAGCTGCTGGGCATCGCCTGCATGGTCATCTGCACCAGATACACCAGTAAAGAGATCCTGACCATCCGGGAGGCCGTGTGGCTCACAGACAACACCTACAAGTACGAGGACCTAGTCCGCATGATGGGGGAGCTCATCTCGGCACTGGAGGGCAAGATCCGAATGCCCACCCTGCTGGACTACGGCGAGGTGCTGCTGGCCCTGACCCCCCTGGAGAAGCGCAGCACCCACCTGTTCAGCTACATCTGCGAGCTGTCTCTGCTCTACACCAGCCTGTCCCGCTTCTCCCCGGCACGCCTGGCGGCCGGTGCGCTGCTTCTCACCCGTGTCCTGCACCGATACGCCCAGCCTTGGACCAGCCAGCTGTGCGAGTGTACCGGCTTCTCCCTGACGGACCTCGTGCCCTGCGTGCTCAGCCTGCACAAGAGATGCTTCCATGACGATGTTCCGAAGGATTACCGGCATGTCTCCCTGACCGGCGTGAAGCAGAGGTTTGAGGACGACTCGTACCAGCAGATCAGCAAGGAGAAGGTGATGGAGTTCAGAGAGCTGTGCCTGATCCTGGAGGTGCGGGAGGAGCAGCTGGCCAGCCCTCAGTCCACGGCCCCCAGCTCCCAGGCCACCGACATGCACACCTTCCTGTCCTCCCCGGCCGGCAAGAGCAAAAGGAGGAGGGAGGACGGTATCCAGGCGGATCGCTGCACCCCCACCGCCGAGCTGTCGACGCAGGAGGAGACGCTGCTGGGAGACTTCCTGGACTGGAGCCTGGACACGTCCTGCTCGGGGTACGAGGGCGACCAGGAGAGCGAGGGCGAGAAGGACGGAGATGGGCTGGCCCCTGGCGTGGTGCTGGAGTTACCGTCACTGGCCGGGGAGGGAGGGGAGTACTGCCGCGCGCTGTCCAGCGATGACGAGGGCCCGGCCGGGGAGGCGCCGCAGAACAGGGGCTCCTGCAGGACTTGGGggccggaggaggaggaggaggaggagggctcGTCTCGGACTCGGGGGCTGATGTCCCGCTCGCTCAGCATGCCGGCAGCGGACCTCAGCTCGGGGTACTCCTCGGTCCACGGCGCCAGCCCGTCCTCCATGGCCGGGGTCCACAGCGCCAGCCCCCCAGTCTCCAAGGCCCAGACCCTGTGTGCGCTGGGGGCCCACAGACACCGCGCCTGCCCCCGGCGGCAAGTAAAGAGGAAGaacacagcagagcacagcGAGGAGGACGACGAAGCCAACACTGGCTTCCTCAGCCTTTGA

Function

NR:

description
PREDICTED: cyclin-F-like, partial

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0010826 negative regulation of centrosome duplication biological_process
GO:0005814 centriole cellular_component
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K10289 CCNF, FBXO1; F-box protein 1 (cyclin F)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018110 True 2262 mRNA 0.66 15 2032723 2046992

Neighbor

gene id symbol gene type direction distance location
AMCG00018107 LOC103024569,LOC104933647,LOC105905426,LOC108424881 coding downstream 53904 1975197 ~ 1978819 (-)
AMCG00018108 adap1,LOC106601846,LOC105005621 coding downstream 62233 1947989 ~ 1970490 (-)
AMCG00018103 lfng,LOC103392616,LOC106537334,LOC101169038 coding downstream 158524 1860513 ~ 1874199 (-)
AMCG00018099 NA coding downstream 262789 1756664 ~ 1769934 (-)
AMCG00018101 NA coding downstream 283703 1748745 ~ 1749020 (-)
AMCG00018109 NA coding upstream 20654 2067646 ~ 2068026 (-)
AMCG00018112 NA coding upstream 25561 2072553 ~ 2081057 (-)
AMCG00018118 NA coding upstream 58613 2105605 ~ 2110667 (-)
AMCG00018117 NA coding upstream 113408 2160400 ~ 2162382 (-)
AMCG00018123 NA coding upstream 156385 2203377 ~ 2209563 (-)
G114363 NA non-coding downstream 48574 1983652 ~ 1984149 (-)
G114304 NA non-coding downstream 154348 1751896 ~ 1878375 (-)
G114286 NA non-coding downstream 497738 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 519081 1512993 ~ 1513642 (-)
G114264 NA non-coding downstream 763907 1268293 ~ 1268816 (-)
G114456 NA non-coding upstream 321438 2368430 ~ 2375735 (-)
G114554 NA non-coding upstream 621468 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 949043 2996035 ~ 2998258 (-)
G114681 NA non-coding upstream 1030049 3077041 ~ 3077760 (-)
G114720 NA non-coding upstream 1093103 3140095 ~ 3141310 (-)
AMCG00018113 NA other downstream 26087 1985149 ~ 2006636 (-)
AMCG00018077 NA other downstream 1105984 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 1232252 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 1590299 441085 ~ 442424 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 234708 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 562153 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 589509 2636501 ~ 2647811 (-)
G114838 NA other upstream 1981024 4028016 ~ 4087031 (-)
G115020 NA other upstream 2539070 4586062 ~ 4588297 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025110 ccnf coding NC_007114.7 CM002887.2 12554801 ~ 12586613 (+)