AMCG00018113


Basic Information

Item Value
gene id AMCG00018113
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1985149 ~ 2006636 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018113
TGCTCTCACCCTGGGATCTGTGTGTATCAGGACCCGTATACTGTCTGCTTAGGTGGTTTGACAGAAAGATAACATCCGCCATAGAGGAGCAACAGTCCGTGCATCAAAACAAGTCGGTTGCAGTTCCCAGAAAACGCTGGGAGGTCAGACAGCTGTCCACCATGGCCACTGAAGAGGGTCTGCTCCAGATGGTCAGTGTAGCCCTGCTGGCGGCGCTGCTGGTCCTGGTCCTGATCCATGTCCTGATCCACGTCTTCCCTGCGGCCGGCTCGTCTGCTCTGAAAGCGCCCCCGGGCCCCTTTCCGCTGCCCATCATAGGGAATCTGCACCAGCTGGATTTGAAAAGGCCCTACAGGTCCCTCATGCAGTTGTCTAAGAAATACGGCAGTGTGTTTACTATCCACCTGGGCCCGAGGAAGGTGGTGGTTCTGGCGGGATACGAAACCGTGAAGGACGTGCTCATTAACCACGCGGAGGAGTTTGGGGACAGAGACATGCTGCCAGTGTTTTATGATTCCAGTGAAGGACATGGTGTGCTTTTTGCAAACGGGGAGTCCTGGAAGGAGATGAGGAGGTTTTCTCTGTCTAATATGCGGGATTTCGGGATGGGAAGGAAAGGAAGTGAGGAAAAGATCATGGAAGAAATGAACTACCTGTCTGAGGTCTTTGAACAACAGGGAGGCAAACCATTTGACGTGAAGGACCCAGTGAATCGTGCGGTTTCGAACATTATATCGTCCATAGTGTACGGCACCAGGTTTGATTATGACGACCCGGTTTTTCAGGCCATGGTTAACAAAGCGAATGAGAGGGTCAGTCTCTCGATGTCACCTCAAATGCAGTTGTACAATGCCTTCCCCTTCCTGGGGTTCTTACTGAGAGACAGGAGGGCATTTCGGAACATCGTTAAGGAAAACCTGGCCAATATCAGAGGCTTTGTGAGGGAACTGCAGATGTCCTTAAACGTGAATGACAAGCGGGGGCTGATCGATTCGTTTCTGATCCGGCAGCAACAGGAATCTGGGCAGGAGGGTTCGCATTTCCATGAGCTCAATCTGATCCACATTGTGTCCAACCTCTTCGTCGCCGGCACCGACACCACCAGCACCACTCTGCGCTGGGGGCTGCTGCTCATGGCCAAGTACCCCCACATCCAGGGTAAGGCGGGTGGGCCTGAGGATGGGGAGCCCAAACAAACCCAATACACATGCAGCTGA
>TU143220
AGGGGACCCCCGTGTGGCCCTTTCTGACCTCTGTGCTGCAGGACGAGACTCAGTGGGAAACCCCCCACCAGTTCAACCCCGGTCACTTCCTGGACTCCGAGGGGAAGCTATTGAAGAGGGACGCCTTCATGCCATTTTCTGCAGGGCCCAGGGCTTGTCTGGGAGAGAGTCTGGCCCGGATGGAGCTGTTCCTGTTCTTCACCTCTCTGCTGCAGAGATTCACCTTCACACCCCCACCAGGCACGGCAGTGTCTGAGCTGGATCTCACCCCCGATGTGGGCTTCATCACCAACCCCATGCCCCACCAGCTGTGCGCTGTCAGCAGGGCGTAACGCTGCCCCCCCTGCGAGAGTGTGTTACTGCTCAGCCTGGTTCCAGCAGATGGGTGCAGCTCCGCTGTCGGAtgattatctttatttttttatatatatacagtgggggaaaaaagtatttgatcccctgctgattttgt
>TU143224
gcagaactgtggaaatcgCCAAGCTGCGTATGCATccccagtttaaaaaaaaaaaaaggtatgaGGTAATCATGGAATTTGAACTCCTCCTGCTGGGCGGTGATCTCGAATTGAACGATAACTGCGCTACACGATCGCGACCTTCACTCTCCGGCAGCACATCACTTTTGGAAGCAGCCAAACTGTTACAGGTGCTTTGACAGAAAGCTAATATCAATCGTCTGAAGGGCTAAAAACGCTGGGAGGTCAGACAGCTGTCCACCATGGCCACTGAAGAGGGTCTGCTCCAGATGGTCAGTGTAGCCCTGCTGGCGGCGCTGCTGGTCCTGATCCATGTCCTGATCCATGTCCTGATCCATGTCCTGATCCATGTCCTGATCCATGTCCTGATCCACGTCTTCCCTGCGGCCGGCTCGTCTGCTCTGAAAGCGCCCCCGGGCCCCTTTCCGCTGCCCATCATAGGGAATCTGCACCAGCTGGATTTGAAAAGGCCCTACAGGTCCCTCATGCAGGGCCCAGGGCTTGTCTGGGAGAGAGTCTGGCCCGGATGGAGCTGTTCCTGTTCTTCACCTCTCTGCTGCAGAGATTCACCTTCACACCCCCACCAGGCACGGCAGTGTCTGAGCTGGATCTCACCCCCGATGTGGGCTTCATCACCAACCCCATGCCCCACCAGCTGTGCGCTGTCAGCAGGGCGTAACGCTGCCCCCCCTGCGAGAGTGTGTTACTGCTCAGCCTGGTTCCAGCAGATGGGTGCAGCTCCGCTGTCGGAtgattatctttatttttttatatatatacagtgggggaaaaaagtatttgatcccctgctgattttgt

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0031090 organelle membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018113 True 1217 mRNA 0.53 6 1986296 1990555
TU143220 False 472 lncRNA 0.57 2 1985149 1985721
TU143224 False 840 TUCP 0.54 4 1985149 2006636

Neighbor

gene id symbol gene type direction distance location
AMCG00018107 LOC103024569,LOC104933647,LOC105905426,LOC108424881 coding downstream 6330 1975197 ~ 1978819 (-)
AMCG00018108 adap1,LOC106601846,LOC105005621 coding downstream 14659 1947989 ~ 1970490 (-)
AMCG00018103 lfng,LOC103392616,LOC106537334,LOC101169038 coding downstream 110950 1860513 ~ 1874199 (-)
AMCG00018099 NA coding downstream 215215 1756664 ~ 1769934 (-)
AMCG00018101 NA coding downstream 236129 1748745 ~ 1749020 (-)
AMCG00018110 LOC107683020 coding upstream 26087 2032723 ~ 2046992 (-)
AMCG00018109 NA coding upstream 61010 2067646 ~ 2068026 (-)
AMCG00018112 NA coding upstream 65917 2072553 ~ 2081057 (-)
AMCG00018118 NA coding upstream 98969 2105605 ~ 2110667 (-)
AMCG00018117 NA coding upstream 153764 2160400 ~ 2162382 (-)
G114363 NA non-coding downstream 1000 1983652 ~ 1984149 (-)
G114304 NA non-coding downstream 106774 1751896 ~ 1878375 (-)
G114286 NA non-coding downstream 450164 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 471507 1512993 ~ 1513642 (-)
G114264 NA non-coding downstream 716333 1268293 ~ 1268816 (-)
G114456 NA non-coding upstream 361794 2368430 ~ 2375735 (-)
G114554 NA non-coding upstream 661824 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 989399 2996035 ~ 2998258 (-)
G114681 NA non-coding upstream 1070405 3077041 ~ 3077760 (-)
G114720 NA non-coding upstream 1133459 3140095 ~ 3141310 (-)
AMCG00018077 NA other downstream 1058410 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 1184678 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 1542725 441085 ~ 442424 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 270 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 275064 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 602509 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 629865 2636501 ~ 2647811 (-)
G114838 NA other upstream 2021380 4028016 ~ 4087031 (-)

Expression


Co-expression Network