AMCG00018124 (srl,LOC107661647,LOC107718567,LOC107553668,LOC107695714)


Basic Information

Item Value
gene id AMCG00018124
gene name srl,LOC107661647,LOC107718567,LOC107553668,LOC107695714
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2281697 ~ 2291760 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018124
AGACCCGGCGGGACAGACCCCCAGCCCCGTGGGGAGGGAGGATGAGACACTGGTGCacctgcagctgcagcaggatGGTGGAGACCTGCTCATGTGTACCTGCAACGGGGCTGTGCTGCACACCAACGATGACCTGGGCCAGTCAGCCACCCCCAGATCGGAAGACCACCTGTCCCCCAAGAGCCAGGCCGGGCAGACTGGGTGCCAGGCTTGCCAAGCCTCCCTGCGGGACGGTGAGGAAGAAAGTTTAGGGACCAGGGAAGCCGATCCCTCAGGAGAAGAGCAAGACTCTGAAGAAGACAATGAGGAGAGCGAGGAAGGACTGGAAGATTCAGAGGACAGCACAGACTCTCTTGGGGCGGAGGGTGGGGAGTTGGTCCTAGAAAATGAAGATGCGGACAATGTTGTTGTGGAAGAAAAGGAGGATGAAGCCACTGTGGAGCTGGTTGAGACTGAAAGAGAGGACCAAGAAGGGAATACAGATCTGGAGACAGAAGAGGACATATTCCAGGATGCAGATGAGAAGGAAATTCCAGACCCGGAGACCGAGCCTCAAGAAACTGTGGAGGAGACTAACTGTGATGAGAGCGCAGAAGAAACTCCACGGAGCCAGTCTGAAGAAGCACAGGAGTGTGAtggagaggaggatgaagatGGGGACAATAGCAGTTCAGAAGATGTTGAAATGCTTGAAACAGGACAACTGGACCAAGATGACGAGGAGCCGGAGTCATCTTCCTCAGAGGAAGAGGCGGCTGAGGAGGATGCAAAGCACATGCCGGATTCTCTGGAGGAATCTGAGAACCAGGATCTGGGGTCTGAAGATGAAGACCCAGAGGACCTTAGTGGGTCTGAAGAATCTGAACGTCCTGACAGTGTGGAGGACCAGGACCCAGAGGAAGCAGAGGCGGGATCTGAAGAGGTGCCCAGTGACGAAGATCCAGAAGAAAAGGTGGGCTCCTCCAAAGAGACCGGAGAACCCAGTACCTCGGAGTTGATCGATGAGGAGGCACCAGAGGGAGCAGAAGCAGACGAGGAGAGAGAAGCTGAGGAGGTGGAAAGCGAGGAAGTGCAAGAATCATCCCAAGAATCAGATACAGCTGGCGAGGGAACGCCTCACAGGGAAGAGATCCAAACTGAAGGAGACGACGGCGGGGAACAGGCCACAGATTCTCCAGAACCAGCTGAAGAGCATCTGTCATCACAAGCCTCTGAGCCAAGCGGAGAAAGAGaagaggaggaggaggtgctgAATACTATTCTCCGAGACAGATCTCACATTGAGGAGACCCTCCGGCTCAAAGAGGATGCCCCATCAGATGACTACTCAGCGGCACTTCAGCGCCTCCGGAAGATCTACCACACCTCCATCAAGCCCCTGGAACAGGCCTACAAGTACAACGAGCTGAGGCAGCACGAGATCTCAGCCTACCCAGGACGAACCCTTGGGGCTTCAGCGACAGATGGAGAGATCACCTCCAAGCCAATGGTGTTGTTCCTGGGACCCTGGAGCGTGGGCAAGTCCTCCATGATTAACTACCTGCTGGGGCTGGAGGACCTCCCCTACCAGCTCTACACAGGCGCTGAGCCCACCACCTCGGAGTTCACCGTCATCATGCACGGCGAGAAGATCCGCTCCATCGAGGGCATCGTGATGGCGGCGGACAGCTCCCGCTCCTTCTCCCCGCTGGAGAAGTTTGGGCAGAACTTCCTGGAGAAGCTGGTGGGCATTGAGATGCCGCACAAAATGCTGGAGAGGGTCACCTTCGTGGACACGCCCGGCATCATCGAGAACCGCAAGCAGCAGGAGAGAgGCTACCCCTTCAACGACGTGTGCCAGTGGTTTATCGACCGGGCCGACCTGATCTTCGTGGTCTTCGACCCCACCAAGCTGGACGTGGGCCTGGAGCTGGAGATGCTCTTCCGGCAGCTGAAGGGCCGTGAGTCCCAGATCCGCATCATCCTGAACAAAGCCGACAGCCTGGTCACGCAGGACCTGATGCGCGTCTACGGCGCCCTCTTCTGGAGCCTGGCGCCGCTGATCAATGTGACCGAGCCGCCCCGCGTCTACGTCAGCTCCTTCTGGCCCCTGGACTACGCGCCCGACACCAGCCGGGAGCTGTTCAAGCGAGAGGAGGTGTCCCTGCTGGAGGACCTGAACCAGGTGATCGAGAACCGCCTGGAGAACAAGATCGCCTTCATCCGGCAGCACGGCATCCGCGTCCGCATCCATGCGCTGCTGGTGGACCGCTACGTGCAGACCTTCCGCGACAAGATGACCTTCTTCAGCGACCCCGAGCTGGTTTTCAAAGAGATCCTGGATGAGCCCGACAAGTTCTACATCTTCAAGTCCATCCTGGCCAAGACCAACGTCAGCAAGTTCGACCTGCCCAACCGCGACGCCTACCGCGActtctttggcatcaactccgTCACCAGCTTCAAGCAGCTGTCCTCCCAGTGCTCGTACATGGGCGGCTGCCTGCTGGAGAAGATCGAGAAGGCCATCACCCACGAGCTGCCCGGCCTGCTGGGGAGCATCGCGTCCGGCAAGAACCCCAGCCTGACCTCGTGCGAAGCCACCGGCTGCGGGGAGACGCCCAAGAACCGCTACCGGAAgcactgaggagagggagggagatggaggggggaggagagaggaggagagaggaagtgagagagagagagagagagagagagaaaaatgtagTGGCCTGAAGCCACCCAGGAGTTTCACATCTTTGTTGGCAGAACCTGGGAGAAAAAGTTCCAGTTtcgttttattgtttttctgtttttgtttttccccccgaTTGGAAGGGAGGGAAGAAAAGAGGGTCGGGATGGGGGTGGAAGAAGGGGTAACGAGAGGGTCAGCAGTAGGTGACagctccctcctctctccctgcgCATGCAGCTCAGAACTGTGGGCGGTCTGGGCAAAAGAAATGGTaataaaaattcaaaataaagagaaaacccagaaaaaaaggaaaacaaaaagaaaagctaaatCCCGAGCCGTCCGCCATCAATACCAGCCCCCCTCCGAGCGGGAATTCAGTGGGAAAGGGAAACGGGAGTTTgctgatttgtttaaaatgattttgtgtatgttttttttaatcacagagGTGGAGGAGCCTTTACCAGCAAAGCTGTCGCTCTGAGTGTTTCTGTTTAACTGAAGTGTCTGAACGTCGGGGTGATCCAGCCCCTTCTTGTAGCCAAAAGCACGGCCAGTATTTCTGACAGATCCCTGCTGTACCAAAGCAACATTTTGCTGAGTCCCAGTTTACAACAGCCCCCATTTTGCCCAATGTGATTAACCACTCTGCTGTACATTAAGTGGTAGGACATTAAAGGTGTATCTGATATCCA

Function

symbol description
srl Predicted to enable GTP binding activity. Predicted to be involved in endocytosis and endosomal transport. Predicted to be located in membrane. Predicted to be active in cytoplasm; intracellular membrane-bounded organelle; and plasma membrane. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human SRL (sarcalumenin).

NR:

description
PREDICTED: sarcalumenin-like

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018124 True 3381 mRNA 0.56 7 2281697 2291760

Neighbor

gene id symbol gene type direction distance location
AMCG00018120 LOC106601835,LOC107695711 coding upstream 68773 2211509 ~ 2212924 (+)
AMCG00018121 NA coding upstream 78367 2200435 ~ 2203330 (+)
AMCG00018116 NA coding upstream 162907 2116615 ~ 2118790 (+)
AMCG00018114 NA coding upstream 176915 2095555 ~ 2104782 (+)
AMCG00018115 NA coding upstream 186571 2080184 ~ 2095126 (+)
AMCG00018125 NA coding downstream 11204 2302964 ~ 2305444 (+)
AMCG00018127 NA coding downstream 36944 2328704 ~ 2334031 (+)
AMCG00018126 crebbpb,LOC108440697,LOC102779454 coding downstream 64517 2356277 ~ 2382087 (+)
AMCG00018129 trap1 coding downstream 93540 2385300 ~ 2391998 (+)
AMCG00018128 NA coding downstream 101545 2393305 ~ 2401409 (+)
G114359 NA non-coding upstream 231520 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 260067 2006906 ~ 2021630 (+)
G114332 NA non-coding upstream 297547 1983651 ~ 1984150 (+)
G114326 NA non-coding upstream 311288 1969780 ~ 1970409 (+)
G114323 NA non-coding upstream 328433 1952874 ~ 1953264 (+)
G114484 NA non-coding downstream 118717 2410477 ~ 2412789 (+)
G114485 NA non-coding downstream 125047 2416807 ~ 2417796 (+)
G114531 NA non-coding downstream 281877 2573637 ~ 2573867 (+)
G114548 LOC104962440 non-coding downstream 317383 2609143 ~ 2609412 (+)
G114553 NA non-coding downstream 376700 2668460 ~ 2668661 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 14922 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 299131 1979046 ~ 1982566 (+)
G114330 NA other upstream 302970 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 307773 1972838 ~ 1973924 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other upstream 332104 1947841 ~ 1949593 (+)
G114518 NA other downstream 199553 2491313 ~ 2568938 (+)
G114551 NA other downstream 349086 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1894650 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2303173 4594933 ~ 4604105 (+)
G115049 NA other downstream 2469758 4761518 ~ 4763905 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G390512 NA non-coding CI01000208 null 137730 ~ 160783 (+)