AMCG00018128


Basic Information

Item Value
gene id AMCG00018128
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2393305 ~ 2401409 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018128
ATGGACGACTCGGACGAGGAATTCTCCGGCCTCTGTGCCAAGCTGCTGAAGCGAGTGAAGAGGAGGGCCGGGGAAGCTGAGAAGAGGAAAGATGGGCAGAGTGGcggagaggaggagagcagagccCCAGCGCCCCCCAGGGCCACCCGGGGGGGCAGGAGAGGCAGGTCCAGGAAGGGGGAGGACAGGGgtttgaggagggaggagagcgAGACGACCAGAAGGGCCGGGTTTTCCCAGGCTGGGGGTGCACTGAGGGACCCCTGTGCTCTGGAAAAAGACCCTGTCCTGCCCTGCAGTGGCCTGGCAGCGCCTCCTGCTGGCAGCACAAGGGAAGTGCCAGTGAATGGGGTCCCGAGTGTGAAGGAGAAGGTGTTGCACAGGATGCAGCAGTTTAAGAGGGTCAGTCCCGAGAGACTGACGCACACCGGGCAGCTCCAGCCAGAGAGAGGTGCCGCTCTCCCTCCAGGTCAGACGCTCAGCTCCTGGGCAGAACCGGACGCCAGCTATGGAGGGACCTTTACTCCCGCCGTGGCCCCCGGCCTGGAGGGGGACGAGGCCCTGGCCGTGCGGCTGCAGGAGGCTCTGCAGAGGGAGGCGTGGGGGGCGGTGGGGCTGGAGTGCGAGGGGCTCTTCTTCTGCCAGATGTGCCAGAAGGACCTGTCGGCCATGAACGCTGTCCGCCGCACCCAACACATCAACAGGTCTGTCCCCGCGCCGTCTGCGATCCGGCCCCCCGGCCCAGCAGGGCAGTGCGGCCCCCCCACTGTACTGAAGTGCCTGGACGAGAGCGAGGGGTCCATACCGCCGTCCGTCCACAGGGTCCCCGAGTGTCCCATCTGCGGGAAGGAGTTCAGATCCCCGCAGAGCCGGGCCGCCCACCTGAAGCGCTGCGCGGTGGCCATGGGCGTCCCCCCCCCACTGCTGCTGGAGGCCCTGCAGAGACAGGTGGCGGAGACAGACGCCGGCGCAGCCCGTCCCCGCCCCCCGCCCGGGCGCCCCAAGAGGAAGGGCTCCGCGGACCCCAGCAGAGCGGCCAAGCGGCCCAAGAGGAGAGCTGAACCCCTGGACGAGGACACCATGGTGGCCCTGGCTCTGTCGCGCTCCCTGGTGGAGGATGAGAGACCGAGGGCGGCCCAGCAGACGGTGGGACAGCCAGGGAGGGTCTGGGACGAACCGCGGAGGCCTGGAGCGAgGAAGAAGCGTCGCAGGAAGGGGGCATCCCCGGCGCCCCTGCCCCTCCTGCTGCTTCAGGACCCCCAGAACGCCCTGCTCCGGCTGCAGGAGAGAGCCTCCAGCCTGCTGCTCCGGGAGCGACCACAGCCCCCACCCACGCCCAGCCTGAGGCCCAGCGGCCTCCCCGCCACTGACACGGCACTGGGGGGTCCCAGCACCCCTCTGTGGCTGCGGAGTGCATTGTGGGACAGCTCCTGCTCCCTCCAGTCCTTCTACACCCCCCAGCTCACGCCTCCCATTGAGCCCTGGACCGCCAGCCTGGAAAGGACGTCCAGCTGTCTTCCTGCGGCTGGTGTCCCAGGGGCCCCTGCTGTGGGGCCCCAGAGAGAGGTCGCTCAGCCTAGCCTCAGCAGTGCCGGGCTGCAGACAGGGGCCCCGGAGTCCGCCAGGTCCGCCGTGAGCTGTGGGTCCCAGGGGAACCAGACGCTGCGTGACCTGATGGATCTGGCGGAGGAGGGCCTGACGCTCACGCAGTGGGGCCCCAGGCTGAGCGCCACACAGGGCCACAGCAGCAGCCCGGCCGCCCTCCCTCTCAGTGGCTTCGTCCCGACTCCAGAGAGAGCGCCCTCAGCTGGCACCTCCCAGGGCCGGGTGGCGCTGTCTCAGCTGGCCTCAGACCTGGCTGCCATGGTCAACAACCCCCAGCTGAGCGACGTGCAGTTCCAGACGGACTCCGGGGACGTGGTCTTCGCTCACTCCTTCATGCTGTACGCTCGCTGCCCCCTGCTGGTACAACTGGTCCACGATGAGGGGTTCTcggtggaggagggggggatgCCCAGCACGAGGAGGGTGCTGCTGGGCGAGGTGCCAGCAGAGGCGGTGTGTGCGCTGCTGCAGTACCTCTACACTGCGGACTGCGCCGTCACGGGCACACTGGCACCCCATGTGGGGGAGCTGGCGTCCAGGTTCGGACTGAGGCAGCTGGAGGAGCTGTGCCAGGGCGTGCAAGGAGCTGACGGGGCCCCGGCGGAGTCCTGGCAGGAAGCCCAAGAGCAGGACATGGAGGGAAAGTGTGAGGATGGGGACCACAATTTCCAGGAACTCCTGCGCTCCATGTGgatagaggaggaggaggagagggaggatgaAGGCCAGGGAGCTGGAGAGGAAGGGTTTAAGGAGTATGAGGGCCAGTTACCCGAGGTCCCCGGAGCGGGAGACACGGACCCAGACAACGAGAGAGTGGACGAGGACGAGCTGGATGAGATCTACGAGTTCGCCGCCACGCAGAGGAAGCTGGTGGCCGGGacgcagagagagagcacacaggaggaggaagaagaggaagaggaggaggaggatgtcGGAGGACTGGAGTCAGAAGTGGAGGAGGaccagaggaggaagagagaagaggTTGTGTGGCCGGGGAAGCGTCTGTTTTCTCCACCAGCTGATCCTCCAGGAGATGGGGATTTGGGAGGCGCCTGTGGAAGCACAGAGAAGGGGATTCCGGCAAACCTTCCGGTCCCAGTAGACCGTGAGAAAGACGGAACCAGTTTGGACACCAGACTCCATTGCGACCCCAGCCTGGATAAGAGCTACGACAGGATATTCTCAGAGTCCTGGGGGGTGTACGTGGAGCCCTCCCAGCAGGACATCAGGACCACAGAGGAGGTCCAGGATGGGCCGGGAGTGGAGGTATGCGGTCCAGCGAGAGGAGGAGCACTCCAGCCAGATCCCAACAGCAAGCCGCTCGTCATCGACCTGTCCATCAGCCCCCCCCTCAGCTCCGCGCATTCCTCTCCTCCCCGCTCGGTCTGCAGTCCCGCCTCGTCCCTGGCGTCCCACCGGAAATCTCCAGGAACTAGAAACGCAGCCCCGGTGGGGTTTGGGAATTCGCCCACTAGTAGGTTTTTCTTCAGTCGCAATCCTGGAAGCGGCCAGAAGCGGACAGGAGGACTCGGGGAGGAGCCCGGGCAACGTGCTATTGGGACTCCCAAAAAGTTGTTCTTTGCCAGCAGGGAGAGAAGCACCCCAGAGAAGAAACCTCCACACCTAGCCACCCCCAGGACACCCCCTGCTTCCAAGCCAGAGGacgtcattgtcctgctggactCCGATGAAGAAATGGAGCTCAAGCAAAGGAGCACGGCATCTCAGGCGatcaaaaatgaaagaaaagcctCTCCAGGCGGGCCACCCCCCCAGGACAACGCAAGTGCCTCTGGTTTGGCCCTTCTGGAGCCGGTCGAACCGAAAACTGATGAAGATTCACCAAGGACCCTGATAAAGACAGAGGACAGGTCCCAGCAGTCTCCTGATATCTTCTCTCCCGGTGCGGACTTGCCCGGGGAAAGATCCCTGGAAGCCGGCAGATTTACCCTCAGGCTGAGCAGCCAGAGTGAGCTGGGCCAGGATGACAGCATGGAGACGTCCTGGCTGGTCCCTGGCACTCCTACCCTTCCAGTCATGGCAAGGAGCATATCCACACAGACCCACAGCTCCATGAACGCGCCAGTCATCAGACGGACTAACCTGTTTCCCGCCGAGTCAAGTTTGGCCCAAAGCAGCAGCTCTGCAAGGTCCAAGAGCTCCCTGATCGCTGTGGCTCTCGGCCGGAACTCCAGTGTCTCTAaatccaccaccaccaccctaAGGCATGGGGGCCCTCAGCGGTCACACACAACAGCAGAGGCTGAAGCCAGAGTCCCGGTTGTGTCATCCAGTTCCGGTTCGGGTCACCAGGTGTCTCCAGTGAAGCGCAGCAGTCCCGAATGTTCTCCACACAGATTAAAAGATGGGGGCAGGTTAGCGCTGGTCACTAACAGTCAGGACCTGTCCTCACCTGAGCCCATCGCTCCCTCTTCCCAACTTCCTATTGAAGACTCTGTGTTACAGCGCAGCTCTTCTAACCTTGCAGCAGAAGCCAGCCTCGGTCCGGCAGACTCACCCCGTTCTCCCAAGAGCACAAATCCTGTCAACAGTACGGTGCCAAGCCTCGAGAGCTCTGCCGCCGTAGGGCTGCGTTCACCAGGGTCACGGGGCTCTGCGGACTTTCAGGACCGGGTACGGGACTGTAACTTGAGCAGCATTAGCTGTCAGTCCCCCAGAGGCGGTGAATTTAGAAGCACAAAGCAAAACCATGAGCAGGAAACCCCCCTCCGACCCGAGCACAGCTTCTGCCTGTCTGACGAGCCACCCATGCCGTTCGATGACACGGGCTGGGGCTTCCCCGAGCCCCTGCACTCGAGCCCCCTGGGGAGCAACGGTCCGGCCACGCCTCCTGAGACAGGAGAGGAAGACGCCCTCACCCCACCTCAGACGTCCCCTGCTTCTCCCCGGCCTAGCTGCCTCCCGGCCCCCCGGGATGAGAGGTCCCCAGAGGCCCACCCCAGCTTCCTGGACTCCAAGCTCTGGGCCGactgggaggaagaggaggtcGTCCTGCCTCTGTCACAGAGAGTGTCTGCGGCCGCCCCCACGCAGCGGGTGAAGGAGCTCCGCACGCCAGTCGCCACCCAGAAGACATCCCTGGGCCCCCTGGTGCCCATTACCCCCATGCCCACCTACTCTGACATGGACACCCCGGAGCTGAAGACCAGACTCAACAGGTTCGGTGTCCGCGCTTTGCCCAAGCGCCAGATGATCCTGAAGCTGAAGGAGATCCACCAGTTCACTCACCAGGTGATCAGCTCCGAGTCTGAGGACGAGGGACCCTCCCCGCCGCGCCCATCCGCCCCATCGCACCGCCGACCCCCGGCTCCCCCACAGGTGAGCATGGCCCCAGCCAGCTCTGCTGTGGCAGGAGGAGCGTTTAAGGAGCCAGCAGGAGCCGCGGTGCGGGGCCCTGGCATCTCTCCTGTGAAAGCTGGGGACTCCGAGGACCCCGAGCTGCTGACGGCCTCCCAGTGCTCCACTGCCTCCTCCACCGCTGCCAGTGAGGACTCCTTCTCCTCCCAGAGGTCGAACCCGGAGGACGTTGAGCTCTCTGGggacgaggacgaggaggacGGGGTCACGGCGTCCCAGGCGGCGACGCGGGAGGAGGACAAGCTGCTGGCCGTGCGGCGCTTCATCACGTCCGACCCCGAGCTGCACCGGTGCGTGCTGCTCTACCAGCCGCTGGTGCTGTCCCAGCTGCAGGCCCGGCTCCGGCAGGCGGGCATCCGGCTGGGCGCCACCAAGCTGCTGGATTTCTTGGACTCCCAGTGCATCACCTTCACCACCGCCAAGCCGGGCCAGCCCCGCGGGCAGCGCCGCCGCCGCCAGAGAGGGGGCAAGACCGGCAGCCAGAGAGCGAGGGGCAAGGATGGGGACTGAGGGGGCCGCTGAGGAGGACAGACCCTGTACAGGGATGTGTGATGGGTTATAAGGAAGGTTATGGAGTGTAGATTGGAGCTTTAGAAGTTCCCTCCCCCGCGCCCCGGCCAGCGCACCGATATGGACTTCCCTGGAGTCCCATTGGTCAGGATTTCAGTGTGTTTCGATAAAGGAACAGCAGGCCGAGATGTAATTGGACAATAAAGGCCGGCGTTCTTGAAACCCAGTGCCAACATGTTATCAGATGCGCTGATGAATGCATGGGTTTCTGGCAACACAGCGGGACTAGTTTGTGATTCTCTGTGGTTTCtggttttgtgcattttgtcGTCCGTGACTGGCTTTTGGCGTTCAGCTCTGAATTGGATTCATTTCAAACATGAAGAGTTTGCCGTTCCCGAGTGTTTACATAGCAGGTGTCTGCGGCTGAATGGAGACTATGAGGCAGGACAATTCGGAGACATCCTGCGCAAGCTCCGGTCCAGAGACTGTCCAGGGCAGCACCGAGGTCCCCGGATCCAGTGAAGCTGCATTTCAGTTCCGGACACAGACTCCCTAAGCGCGTCCGGTCCAGCGGACTGTGCTGCTACTCGATGTCTGCCGGCACATGTCCAAACGCCACCAGCAGTTCTGAGCTCCcgttcttgttttttaaatcagtgatgttttgtctatttttaagGGTCATggttgtgcatttgtttttttgtttggatattatgtgaaagtttaaaagaagtgttgtaatacttttttatgCTTTGTGATGCACTTGAA

Function

GO: NA

KEGG:

id description
K10484 BTBD12, SLX4; structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018128 True 6279 mRNA 0.63 14 2393305 2401409

Neighbor

gene id symbol gene type direction distance location
AMCG00018129 trap1 coding upstream 1307 2385300 ~ 2391998 (+)
AMCG00018126 crebbpb,LOC108440697,LOC102779454 coding upstream 11218 2356277 ~ 2382087 (+)
AMCG00018127 NA coding upstream 59274 2328704 ~ 2334031 (+)
AMCG00018125 NA coding upstream 87861 2302964 ~ 2305444 (+)
AMCG00018124 srl,LOC107661647,LOC107718567,LOC107553668,LOC107695714 coding upstream 101545 2281697 ~ 2291760 (+)
AMCG00018131 NA coding downstream 19856 2421265 ~ 2432982 (+)
AMCG00018133 NA coding downstream 31989 2433398 ~ 2433656 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding downstream 33047 2434456 ~ 2443528 (+)
AMCG00018132 NA coding downstream 48380 2449789 ~ 2464758 (+)
AMCG00018138 NA coding downstream 172986 2574395 ~ 2579357 (+)
G114359 NA non-coding upstream 343128 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 371675 2006906 ~ 2021630 (+)
G114332 NA non-coding upstream 409155 1983651 ~ 1984150 (+)
G114326 NA non-coding upstream 422896 1969780 ~ 1970409 (+)
G114323 NA non-coding upstream 440041 1952874 ~ 1953264 (+)
G114484 NA non-coding downstream 9068 2410477 ~ 2412789 (+)
G114485 NA non-coding downstream 15398 2416807 ~ 2417796 (+)
G114531 NA non-coding downstream 172228 2573637 ~ 2573867 (+)
G114548 LOC104962440 non-coding downstream 207734 2609143 ~ 2609412 (+)
G114553 NA non-coding downstream 267051 2668460 ~ 2668661 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 126530 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 410739 1979046 ~ 1982566 (+)
G114330 NA other upstream 414578 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 419381 1972838 ~ 1973924 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other upstream 443712 1947841 ~ 1949593 (+)
G114518 NA other downstream 89904 2491313 ~ 2568938 (+)
G114551 NA other downstream 239437 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1785001 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2193524 4594933 ~ 4604105 (+)
G115049 NA other downstream 2360109 4761518 ~ 4763905 (+)

Expression


Co-expression Network