AMCG00018130 (LOC105893914,LOC107598040,LOC107571734)


Basic Information

Item Value
gene id AMCG00018130
gene name LOC105893914,LOC107598040,LOC107571734
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2434456 ~ 2443528 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018130
ATGACTGCGAAGATGACTGCCGTGCAGTGGCACTCTCGAGGGCGCTGCTATGAGGCCGAGCTGGAGGACCGGCGGCCCGAGGCGATGCTGGTGGAGTTTGGGGACTACCACCCTCTGAAGCCCATTACGGTGACCGACTCCAAGACGCGGCGCGCGGGGCGAAAGGGCagctcgtcctcctcctcctcctcctccagctccgcCCCCGACCCCCTCAGCTCCATGCTGGATGGCACCGACCCCCTCTCCATGTTTGCCGCCGCAGCCAGCGAGACCCCCGGCCCATCGCTCGGCGCCACCAACCCGGGGGAAGCAGGCAGGAGGAGgcgggagaaggaggaggaagtggCCGTGGGCCCAGACTTCGAGCCCTGGGCGGCCAAGCGCAGTGACATCCTGGCCAGGTTCACCACCACCGAGAAGCTGTCTATTaACCTGTACATGGGGTCTGACAAAGGCAAGGCTCCCAGTCCCGGGACGACGGTGTCAGAGAAGGTGCGCAACCGATTGGAGGAGCTGGACGACCTGGAGGAGGGCTCACAGAAGGAGCTGCTGAACCTGTCCCAGCAGGACTACGTCAACCGCATCGAGGAGCTCAACCAGTCCCTGAAGGAGGCGTGGGCGTCCGACCAGAAAGTCAAGGCCCTCAAGATTGTCATccagTGCTCCAAGCTGCTGTCCGACACCGCGGTGATCCAGTTCTACCCCAGCAAGTTCGTCCTCATCACCGACATCCTGGACACCTTCGGGCGTCTGGTGTACGACAGAATCTGGACCATGTGCTCCGACACGCGGCCCCTGCCAGACTTCTTCTCCCCAGATGATGTCAACGACACGGCTAAGGAGACCTGTCTCAACTGGTTCTTCAAAATCGCCTCAATCAGAGAGCTCATTCCTCGGCTGGTCTTTACTCCCCTGTCCCTGCTGGCCGGCCCCGGtgaacagatgtgtgtgtgtgagatcacAGCTGTGTCTGACTGTGCTTCACAATCCCTGCTCCGCCCTTCCTTCACCATGGCGCTCAGATACGTGGAGGCCGCGATCCTGAAGTGCAACCGCTTCCTGTCCAAGGCGGGCATCCAGGACACACTGCTGCGCCTAACTGCCATGATCCGAGGCATCGGGGACCCTCTGGTGGGGGTGTACGCCCGAGCCTACCTCTGCAGGgtGGGTATGGAGGTGGCCCCCCAGCTGAAGGACAGCCTCAACAAGAACTTCTTCGACTTGCTGACCTCGTTCCGGCAGGTCCACGGGGACAGCGTCCAGAACCAGCTAGTCCTGCAGTGCGTGGAGATCCCAGCCTACCTCACGCTCTACTCCCCCGCGACGCACTGGGTCCTGCAGTGCGTCTCCTACCGCGCCCCCGAGGCCCTGTTGACGGAGATGATGGAGAGGTGTAAGAAGCTGGGGAACAATGCCCTGCTGCTGAACTCGGTGATGTCGGCGTTTCGGGCGGAGTTCATCGCGGCACGCGCCATGGACTTCATCAGCATGGTCAAGGAGTGCGACGAGGCGGGCTTCCCGAAGcacTTGCTGTTCGGGTCCCTGGGCCGCAGTCTGGCCTGCACCGACCCCCCCGAGGCGGACAGGCTGACCATCCTGAACGAGGCCTGGAAAGTCATCACCAAGCTGCGCAGCCCCCAGGACTACATCAACTGTGCCGAGATCTGGGTGGAGTTCACCTGCCGCCACTTCACTAAGCGGGAGGTCAACACTGTGCTCTCTGACATCATCAAACACATGACGCCCGACCGTGCCTTCGAAGACGCCTACCCCCAGCTGCAGTGCGTGATCACCAAGATCCTGACGTACTTCCATGACTTCTCCATGCTGTTCTCCATGgagAGGTTCCTGCCGTTCCTGGACATGTTTCAGAAGGACAGCGTGAGGGTGGAGGTGTGCCGCTCCATCATGGAGGTGTTCATCAGGTCCGTCAGTCcgcgtgtctgtctgtcactccCGGCGCCCCTGTGCGTCTGTCCATCCGCGGCTTCTCCTCACACCGCTTGTGTCTCCGCCCGCAGGTACCAGCAGGAGCCGACCCGAGACCCGGTCATCCTCAACGCCCTGCTGCACGTCTGCAAGACCATGCACGACTCGGTCAATGCCCTGACTCTGGACGATGAGAAGAGGTCTCTGGCACTCCTGATCAACGGCTTCATCAGAATGGTGTCGTTCGGCCGGGACTTCGAGCAGCAGCTGAGTTTCTGCGTCGAGGCGCGTGCCACCTTCTGCAACCTGGAGCCGGTGCTGGTGCAGCTCATCCACacgGTGAACCAGCTGGCCATGGAGACGCGCCGTGTGATGCGGGGCAGCCACTCCCGGAAGACTGCGGCCTTTGTCAGGGCCTGCGCTGCCTACAGCTTCATCACCATCCCCTCCCTCACCAGCATCTTCAGCCGCCTCAACCTTTACCTGCTGTCCGGACAAGTGGCGCTGGCCAACCAGTGTCTTTCCCAGGcgGACGCGTTCCTGAAGGCAGCGGTCGGCGTGCTGCCCGAGGTGCCGCGCTCGCTCAGCGTGGAGGGCAAGGTGCGCTCCTCTGAGGGCTTCCTGCTGGAGTTCATCAACAACTTCATGTCCACTCTGCTGGTGGTGCCCgaCCACCCGGAGCAGGGCGTGCTGTACCTGGTGCGCGGGCTGCTCAACGTGGTCCAGGAGTACAGCTGGGAGGACAGCAGCGACGCCAAGGTCCGAGTGTACATCAGTGCCCTGCAGCTGCTGGCGGCCATGAGCCAGGAGAGCTACCTCTACTGCGTCCCCAAAGTGGACTCCAATGAGAAGCTCTATGGCGGCGATCCCAAGTTCATGGCCGAGATCAACAAGCTATGCGAGACTCTGATTGGCCAGGTCCTGGACCACCTGAAGACCCTGGGCAAGGAGGAGAGTCTGCGCAGACAGAGCTCGCTGGCCTTCTCCCTGTTCGGCTGCCTGCTGGCCCACGGAGACCTGCGCAAGAGCCAGCTCAACCAGATGGCCGTCAGCCTGTGGAATCTGAGCCAGAGACACGGCGTGGCCGACACCCGCACCGCGgttcgCACCCTGGAGGCCATCAAGCAGCAGAGCCGCCACCAGGACATGAGCCACTTCTCGGAACTGGCCCAGCGGCTCCCCCTGCAGACCAGAACCTGAAGCTAGAACCGGACCCCGCCCCCACGCCCCCAC

Function

NR:

description
PREDICTED: UPF0505 protein C16orf62 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018130 True 3165 mRNA 0.63 30 2434456 2443528

Neighbor

gene id symbol gene type direction distance location
AMCG00018133 NA coding upstream 800 2433398 ~ 2433656 (+)
AMCG00018131 NA coding upstream 1474 2421265 ~ 2432982 (+)
AMCG00018128 NA coding upstream 33047 2393305 ~ 2401409 (+)
AMCG00018129 trap1 coding upstream 42458 2385300 ~ 2391998 (+)
AMCG00018126 crebbpb,LOC108440697,LOC102779454 coding upstream 52369 2356277 ~ 2382087 (+)
AMCG00018132 NA coding downstream 6261 2449789 ~ 2464758 (+)
AMCG00018138 NA coding downstream 130867 2574395 ~ 2579357 (+)
AMCG00018146 NA coding downstream 255300 2698828 ~ 2717437 (+)
AMCG00018145 NA coding downstream 273974 2717502 ~ 2747393 (+)
AMCG00018144 NA coding downstream 339534 2783062 ~ 2786522 (+)
G114485 NA non-coding upstream 16660 2416807 ~ 2417796 (+)
G114484 NA non-coding upstream 21667 2410477 ~ 2412789 (+)
G114359 NA non-coding upstream 384279 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 412826 2006906 ~ 2021630 (+)
G114332 NA non-coding upstream 450306 1983651 ~ 1984150 (+)
G114531 NA non-coding downstream 130109 2573637 ~ 2573867 (+)
G114548 LOC104962440 non-coding downstream 165615 2609143 ~ 2609412 (+)
G114553 NA non-coding downstream 224932 2668460 ~ 2668661 (+)
G114555 NA non-coding downstream 227379 2670907 ~ 2742686 (+)
G114613 NA non-coding downstream 400777 2844305 ~ 2845453 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 167681 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 451890 1979046 ~ 1982566 (+)
G114330 NA other upstream 455729 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 460532 1972838 ~ 1973924 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other upstream 484863 1947841 ~ 1949593 (+)
G114518 NA other downstream 47785 2491313 ~ 2568938 (+)
G114551 NA other downstream 197318 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1742882 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2151405 4594933 ~ 4604105 (+)
G115049 NA other downstream 2317990 4761518 ~ 4763905 (+)

Expression


Co-expression Network