AMCG00018138


Basic Information

Item Value
gene id AMCG00018138
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2574395 ~ 2579357 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018138
AGACCGTGTGCCCAGGCAACGCACAGCGCAGACACAGACCCGCACAGCGCAGACACAGACCCGCACAGCGCAGACACAGACCCGCACAGACCCGCACAGCCCGCAAACATCAGCGCGGTGACTTTGTAACACATTGGTCTGCAATCAGAAACAATAGCCATGTCGGCTCAGATGTTAGTTTCTAGACCCAAATTCGACACCAGAGCGGTCGCCCAGCAGGAGCTGCCCCCGAAGTCCAACCAGATCCAAGTGAACGGGGGTCTGCACTCGTCCTCCGGGCTGACCACCGCAGGGTACCGGACAGCCAAGTACACCCCGGACGAGTGGCACCGGAACAACCACTCCATCTTCGGCCAGGCTTTCGGGGACCGGGCCAAGGCGCACAGCATCCGACAGGAGGCCAAGCAGCTGTGCGGCGGCACGGAGGCCGGCTCGCTGCGGGCGCAGGCGCAGGGGACGCGGCTGCTGGGGACGCGGCTGCAGGACGTGCACTTCTGGCGCTCCGAGCTGCAGCGGCACGTCGAGGCGCTCACGGCGGAGACGGAGCTGCTGCTGGGCCAGAAGCGGCGGCTGGAGAGAGCCCGGGACAGCGCGGAGATCCCCCTGGCCATCGCCACCGATAACCTGGCCTGCCGGGAGCGGCGGCTGGGGCCGGACCTGGTCAAGGACGGGGTGGAGGTGGAGCTGCTCCGGGAGGTGGAGCTCATTCGAAGTGTTCAGGAGCTGCTGAAAAGGACTTTAGATCAGGCCATTGATCAGATAAGAGCAAACAGAGATGTCAAGCAGACCCTGGAGCTGGACTGGTCGGACAAGCACGAGGCCTACACCATGGATGACCAGTGCGGCAGATACAACAACCTGAGCACCGACACGCAGTTCCACTTCAACTCCACCAAGTTCCAGGAGAGGTACGACCCCCCAGGGCCACACAGACCCGGATACACCAGGAAGGGCGAGGGCGAGGCCCCCGGTCAACGAAAACTGAGCTTTGAGTGCCATTTTAAGAATAACGTGTCCACCCATGAAAGCTGGACTAAGTTCACCCGGGACAACATCACCCTGTCTGAGCGCGAGGAGAGGGCTTCTCTGGACCTCCGCGCCCTGATTGACCAGGTGCTGCAGGACACGGCAGAGGACCTGCGCACTCAGTGCGCCGCGGTGGACCGGGCCTTCTCCCAGCGCTGCGATGACATGAACGAGGCCAAGGTCCGACTGGAACAGCACCTCAACCAGGTTCTGGAGCAGATAGGCAGCCAGGAGAGGAACATCGCGGCTCTAGAGCGGGCCATCAGGGATAAAGAGGCCCCAATGAAAGCGGCTCAGACCCGGCTGTACCAGAGGTCATACCGGCCCAACATGGAGCTCTGCCAAGACACTGCGCAGTTCAGGCTGGTCAACGAGGTGGGAGAGATCACAGAGTCCATCGAGGCCCTGAAGAAGAAGCTGGAGGAGGGCCGCCAGTCTCTGAGAGACATGGAGGACACCCGCATGACCCTGCAGAAGGAGATCGGCTACAAGACCAACAGCCTCTTCATCGACCGGGACAAATGCACGACCCACCGCACGTCCTACCCCACCATCATCAGGCTGACTGGGTACTGAGGCCGCCCCCCCCTGCCTCAGGAGGCGCCCGGTCCGCAGTCACCCTGAGGTTTTGAATGTTGGTTGGCTCCACGGTCACAGAGTTGAGCTgagattgtttttctctctctccttttcatGTAGATGTTAATTAAAAGGGTGTTGGTCATTAATACgggcaaaataaacaaacaaacatacctGCA

Function

GO: NA

KEGG:

id description
K18631 TEKT4; tektin-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018138 True 1787 mRNA 0.61 6 2574395 2579357

Neighbor

gene id symbol gene type direction distance location
AMCG00018132 NA coding upstream 109637 2449789 ~ 2464758 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding upstream 130867 2434456 ~ 2443528 (+)
AMCG00018133 NA coding upstream 140739 2433398 ~ 2433656 (+)
AMCG00018131 NA coding upstream 141413 2421265 ~ 2432982 (+)
AMCG00018128 NA coding upstream 172986 2393305 ~ 2401409 (+)
AMCG00018146 NA coding downstream 119471 2698828 ~ 2717437 (+)
AMCG00018145 NA coding downstream 138145 2717502 ~ 2747393 (+)
AMCG00018144 NA coding downstream 203705 2783062 ~ 2786522 (+)
AMCG00018149 LOC107753764,LOC107661878,LOC107718604 coding downstream 209016 2788373 ~ 2793873 (+)
AMCG00018150 NA coding downstream 235090 2814447 ~ 2827770 (+)
G114531 NA non-coding upstream 528 2573637 ~ 2573867 (+)
G114485 NA non-coding upstream 156599 2416807 ~ 2417796 (+)
G114484 NA non-coding upstream 161606 2410477 ~ 2412789 (+)
G114359 NA non-coding upstream 524218 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 552765 2006906 ~ 2021630 (+)
G114548 LOC104962440 non-coding downstream 29786 2609143 ~ 2609412 (+)
G114553 NA non-coding downstream 89103 2668460 ~ 2668661 (+)
G114555 NA non-coding downstream 91550 2670907 ~ 2742686 (+)
G114613 NA non-coding downstream 264948 2844305 ~ 2845453 (+)
G114624 NA non-coding downstream 285631 2864988 ~ 2867237 (+)
G114518 NA other upstream 5457 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 307620 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 591829 1979046 ~ 1982566 (+)
G114330 NA other upstream 595668 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 600471 1972838 ~ 1973924 (+)
G114551 NA other downstream 61489 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1607053 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2015576 4594933 ~ 4604105 (+)
G115049 NA other downstream 2182161 4761518 ~ 4763905 (+)
G115299 NA other downstream 3370106 5949463 ~ 5951017 (+)

Expression


Co-expression Network