AMCG00018142


Basic Information

Item Value
gene id AMCG00018142
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2636501 ~ 2647811 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018142
TAAAAACCCGCGCAGTGGGCAGCTCTGCGCACAAGTAGTCTAACACCAGGAATACAGCAGAGGAGCCGGGCTCTTCACTGAAAACTTTCACTGACATGCATGAGAGAGAGGCATTGGATCGACATATCTACATTGCATTGTGAGgataaagttaaattaaaatatatgtgaataGCAGATTCCAAGGCAGGCTGAGTGAAGGAGCAGTGAGGGGCGCCCTGGAGGAGCGCAGCGCATCGCCGGGGCTCAGGAAGCCTCTCCGCGGGGTTTGGTGCCGCTGCCACCGGATTGCGCGCACAGActctccccttcccctcctcaCTGAATTGCCGGGGCTGATTGCTGACGAACCCGTAGGATGACAGTCGACCTCGGCGTGAAAGTGTCCGACGCATCTGCATGTACCAGAACGGAGACAATCATCCACTGAAAGCCATGGATAGGATCTGAAAACTAAAAAGGTATTTTGTGGGGACTTCCTGTGACTCAGTCAAACCACACACCAGAATGGACCCACTTGGAAGCTCAGCCTGGGCAGACAGCCCTGTGGAGCTCAACCACACCTAtgacacaaacaatacaaaggCGACGCCTCTGGAGGGCATCAGTACAATCCTGATCCCTGTGATTTATATGACCGTGTTCATCGTCGGACTCAGCGGGAACACTCTGGCCATTTACGTGGTCCTGCGGTACACCAAGATGAAAACCGTTACCAACATCTACATCCTGAACTTGGCTGTGGCCGATGAACTGTTCATGCTGGGCCTCCCCTTCCTCACCACACAGAACGTGCTCTCCTACTGGCCGTTTGGGTCCTTCATGTGCCGGCTGGTCATGACGGTGGATGCTATCAACCAGTTCACCAGCATCTTCTGCCTGACCGTCATGAGCATAGACCGCTATCTGGCTGTGGTGCACCCCATCAAGTCCACAAAGTGGCGCAGGCCCAGGGTGGCAAAGTTCATCAACGTCACCGTGTGGTGTCTGTCTTTTCTAGTTGTGCTACCGGTGATCATTTTCTCTGATGTCCAGAAAGGACTGAACACCTGCAACATCAACTGGCCAGACCCCAACGCCGTGTGGTCCACGGCCTTTATCATTTACACCTCCGTCGTGGGCTTCTTCGGGCCCCTGCTGGTAATCTGCATGTGCTACTTGCTGATTGTGGTCAAGGTGAAATCTTCTGGTGTGCGGGCCGGATTCACCAAGAGGAGGAAGTCGGAGAAAAAGGTCACCAAAATGGTGGTCATCATCGTCGTGGTGTTTGTGTGCTGCTGGCTGCCATTTTACATCCTCAACATGGTCAACCTGGTGTTCATCGTGCCCGAGAACAACGTCATGGCTGGGATCTATTTTTTCGTGGTGATCATGTCCTACGCCAACAGCTGCGCCAACCCCATACTCTACGGCTTTCTCTCTGACAACTTCAAGCAGAGCTTCCGCAAAGTCCTGTGCATCCACAAGGGGAATGGGGTGGAGGACGGAGACCCGAGCCTCCCCAGGACAGAGAAGATAACCTATCAGGAATCCTTTCTCTCACAAAGGAACAATGAGTTCAACGGCCACATGCAGACAAGTCAGGGCATCCATCTGGAGGAGTGCTGCAACACTAAAGGTGATACGCGGCCCCTGGCTCCCGCCGTGATGGGCCAGTCAACGCTGTAAAGACTTCACTCTCTCTTGTGCTTGACGTGCTGAAGAGACCCCTTCAGCCGCCCTCAACACACGTCCACCACTGACTCCTTTCATAGAGGTCGCCTTTTCGTCAGGCCTTGATGGTCTTTCCTCACCCTGCCATGGTGACCTCTGATCCTCTGCTGGAGATGGCAGTTCAGGTGAAGGTGGCGTTGGCCAAACAGGAAGGCGTGGACGCGGGCAGCTGTGACCAGACTCTTTTTGTGCAGCCCTGCCCGGTGAGAACGCAGTCCCTCGACCATTGAATGCTATTGATGAAACCAGCTAAAGTCTGGGATGaactaataaaatgtaaaatttggaagttggaaaaaaaatatgctttgggggaaaaaaaataaacgtttatTTTATGGTTCACTTATTCTTGTTGCAAAATGTGTGAATTACCAACACACTATAATTTTATAGCTCAATAGCAATTTTCAGAAAACACTGGGTGTGCATTAATCAGGACTCTCAGATGAgtcataattttaattttagaagCACCAACGGGAGACTATTTTTGAATCCTTTTTACAAGTCGAAGGTGCCATATTTAATCAGTCTTTTTATTAACTAGAAGTTAAGTCTGTCTCCTATACTGTCCATGTAAAAAATTGGGAAAGGTAATTGTGTAAAATAACTATATTTATATGAGGAGTTATCACACTTATCACCCAATAGAATTTGGTGTTATTCACTAACACATAAAATATAGCTAATCTGAAACTATTCTTACTGCATATCTTTCAGATCCTAATAAGATCATATTAATCAAATAGGATAAGACATGGACTCCCAGCTCAAAATCATCTACTTGTAATGCTGTAATTATGGAGATGAAGTCTCTATTCTCTTTAATCCACTGTGCTTGCAAGGCAGAGTTTAAGGAAGACAATCTTCCCAGAGTCATTGTTAGCCTGgggttttgattttattgttctAATTGAACTATTAATTAGTTTGGATaatcaaactatttaaatggACTCTTCAAATGGATGACAACTCTGCCCAGCCCTTCAGTGGGCGGGGTTTAAAAGTGTGCGTTGACCCCCTAGCTTGGTTGCAGAGCTCCAATCACCGAGGCCTTGCAAAACACAACTTGTTAACTGTGGCAGTGTTTTGACACATTCAGATTCCCACCTGCTTTCTGTGTATCCTTAATTGGCCACCACTTAAGAGCTAATATCAGACAACGACAAGTGAGCAAAATCAAAGTTGAGGAAAGAtgatttgatatatatttatcttgGGCAACAATCTAAATCACACAGAGCTTTTCTGAAACTATGGGAAGAGCACTGAACACAGCTATAAAAGACATAAGACAAGGGAACAGCCCAGTCTGCAGCTCTGTagcaaagtttcagggcaccATACCGAGGTTGTGAACCCTGGTTTGGTCTCATTATCATTTATTCCCGAAATACTTTGTTGCACGTAATTATAATGCGAGACAGACGGGAGCCACATCCTGTGAGGTCATGAGAACGTACCGCAGTGGGCAGAGTTTGACATTTAATcgtaaatgttaatgtttatttacttcCAAAAACAGAATATGTGAGCAATGACTTCCTATCGCAAGCCACTATTGACCATGATCCGAAGGGAGCAGCACAATGCGCATCAACTTTGTTTTCCATCAAACTGTCTGTGAAATTATTAACATCAGTTAATGAaatgctgttgtgtgtttttccttaCTTTCTGGGAAAAATATGAAGTTGGCAAAAGTTTGACCTGGCTACAATTTTTGTTTatgcttgttttgttgtgctgCTTTGCTCGTTATTGCATTGGTAAAGACTGCAGTTGTTTGTAAGGTCTGTTAATGTGTTGCAGCATGAGTGCTATTACAGACTGCTTTGGCTCGCTTACTGTCTGTTGTGGCTGCATTGACAGTGCTTATGTGAGgttaatacaatgaaaatacagCCAATAATAGTAATCACGTCAAAAACCGGGGTAGGTCAGTTTCCATGTGATCAGCAACATTTCCACCCTTTATGTGTCAAATGAAAACCACGTGGTGTGTCTTGAGTTGTGCAGCATCGAGCTCGGATATGATCAATTAATCTGTACTGTACATGCTATGAACATTGTGAACAatcacactgaaaataaatccccTGTATATTGTCCTTTGGTCAAATGTTATGTATGTTCCAGTTCCAATAAAACTgtgttagaaaaaaaa
>TU143460
GCCGCAGTGCTGGCTGTGCACCATTAGGAGCTGTGATAACCAAGGTATGGCAACAGCATGACGGGGGACGCACAGTGTCACGTCTCCACGGTGTTAAAAACCCGCGCAGTGGGCAGCTCTGCGCACAAGTAGTCTAACACCAGGAATACAGCAGAGGAGCCGGGCTCTTCACTGAAAACTTTCACTGACATGCATGAGAGAGAGGCATTGGATCGACATATCTACATTGCATTGTGAGgataaagttaaattaaaatatatgtgaataGCAGATTCCAAGGCAGGCTGAGTGAAGGAGCAGTGAGGGGCGCCCTGGAGGAGCGCAGCGCATCGCCGGGGCTCAGGAAGCCTCTCCGCGGGGTTTGGTGCCGCTGCCACCGGATTGCGCGCACAGActctccccttcccctcctcaCTGAATTGCCGGGGCTGATTGCTGACGAACCCGTAGGATGACAGTCGACCTCGGCGTGAAAGTGTCCGACGCATCTGCATGTACCAGAACGGAGACAATCATCCACTGAAAGCCATGGATAGGATCTGAAAACTAAAAAGGGCATCCATCTGGAGGAGTGCTGCAACACTAAAGGTGATACGCGGCCCCTGGCTCCCGCCGTGATGGGCCAGTCAACGCTGTAAAGACTTCACTCTCTCTTGTGCTTGACGTGCTGAAGAGACCCCTTCAGCCGCCCTCAACACACGTCCACCACTGACTCCTTTCATAGAGGTCGCCTTTTCGTCAGGCCTTGATGGTCTTTCCTCACCCTGCCATGGTGACCTCTGATCCTCTGCTGGAGATGGCAGTTCAGGTGAAGGTGGCGTTGGCCAAACAGGAAGGCGTGGACGCGGGCAGCTGTGACCAGACTCTTTTTGTGCAGCCCTGCCCGGTGAGAACGCAGTCCCTCGACCATTGAATGCTATTGATGAAACCAGCTAAAGTCTGGGATGaactaataaaatgtaaaatttggaagttggaaaaaaaatatgctttgggggaaaaaaaataaacgtttatTTTATGGTTCACTTATTCTTGTTGCAAAATGTGTGAATTACCAACACACTATAATTTTATAGCTCAATAGCAATTTTCAGAAAACACTGGGTGTGCATTAATCAGGACTCTCAGATGAgtcataattttaattttagaagCACCAACGGGAGACTATTTTTGAATCCTTTTTACAAGTCGAAGGTGCCATATTTAATCAGTCTTTTTATTAACTAGAAGTTAAGTCTGTCTCCTATACTGTCCATGTAAAAAATTGGGAAAGGTAATTGTGTAAAATAACTATATTTATATGAGGAGTTATCACACTTATCACCCAATAGAATTTGGTGTTATTCACTAACACATAAAATATAGCTAATCTGAAACTATTCTTACTGCATATCTTTCAGATCCTAATAAGATCATATTAATCAAATAGGATAAGACATGGACTCCCAGCTCAAAATCATCTACTTGTAATGCTGTAATTATGGAGATGAAGTCTCTATTCTCTTTAATCCACTGTGCTTGCAAGGCAGAGTTTAAGGAAGACAATCTTCCCAGAGTCATTGTTAGCCTGgggttttgattttattgttctAATTGAACTATTAATTAGTTTGGATaatcaaactatttaaatggACTCTTCAAATGGATGACAACTCTGCCCAGCCCTTCAGTGGGCGGGGTTTAAAAGTGTGCGTTGACCCCCTAGCTTGGTTGCAGAGCTCCAATCACCGAGGCCTTGCAAAACACAACTTGTTAACTGTGGCAGTGTTTTGACACATTCAGATTCCCACCTGCTTTCTGTGTATCCTTAATTGGCCACCACTTAAGAGCTAATATCAGACAACGACAAGTGAGCAAAATCAAAGTTGAGGAAAGAtgatttgatatatatttatcttgGGCAACAATCTAAATCACACAGAGCTTTTCTGAAACTATGGGAAGAGCACTGAACACAGCTATAAAAGACATAAGACAAGGGAACAGCCCAGTCTGCAGCTCTGTagcaaagtttcagggcaccATACCGAGGTTGTGAACCCTGGTTTGGTCTCATTATCATTTATTCCCGAAATACTTTGTTGCACGTAATTATAATGCGAGACAGACGGGAGCCACATCCTGTGAGGTCATGAGAACGTACCGCAGTGGGCAGAGTTTGACATTTAATcgtaaatgttaatgtttatttacttcCAAAAACAGAATATGTGAGCAATGACTTCCTATCGCAAGCCACTATTGACCATGATCCGAAGGGAGCAGCACAATGCGCATCAACTTTGTTTTCCATCAAACTGTCTGTGAAATTATTAACATCAGTTAATGAaatgctgttgtgtgtttttccttaCTTTCTGGGAAAAATATGAAGTTGGCAAAAGTTTGACCTGGCTACAATTTTTGTTTatgcttgttttgttgtgctgCTTTGCTCGTTATTGCATTGGTAAAGACTGCAGTTGTTTGTAAGGTCTGTTAATGTGTTGCAGCATGAGTGCTATTACAGACTGCTTTGGCTCGCTTACTGTCTGTTGTGGCTGCATTGACAGTGCTTATGTGAGgttaatacaatgaaaatacagCCAATAATAGTAATCACGTCAAAAACCGGGGTAGGTCAGTTTCCATGTGATCAGCAACATTTCCACCCTTTATGTGTCAAATGAAAACCACGTGGTGTGTCTTGAGTTGTGCAGCATCGAGCTCGGATATGATCAATTAATCTGTACTGTACATGCTATGAACATTGTGAACAatcacactgaaaataaatccccTGTATATTGTCCTTTGGTCAAATGTTATGTATGTTCCAGTTCCAATAAAACTgtgttagaaaaaaaa

Function

GO: NA

KEGG:

id description
K04221 SSTR5; somatostatin receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018142 True 3886 mRNA 0.45 3 2636501 2647717
TU143460 False 2857 lncRNA 0.43 2 2636501 2647811

Neighbor

gene id symbol gene type direction distance location
AMCG00018141 NA coding downstream 64553 2566291 ~ 2571948 (-)
AMCG00018139 NA coding downstream 119044 2515317 ~ 2517457 (-)
AMCG00018140 NA coding downstream 139083 2493067 ~ 2497418 (-)
AMCG00018136 NA coding downstream 160246 2466703 ~ 2476255 (-)
AMCG00018134 NA coding downstream 186804 2443707 ~ 2449697 (-)
AMCG00018143 NA coding upstream 25686 2673497 ~ 2674351 (-)
AMCG00018147 tsc2 coding upstream 104138 2751949 ~ 2783012 (-)
AMCG00018151 NA coding upstream 184245 2832056 ~ 2838291 (-)
AMCG00018152 get4 coding upstream 191951 2839762 ~ 2847976 (-)
AMCG00018153 NA coding upstream 203618 2851429 ~ 2869367 (-)
G114456 NA non-coding downstream 260766 2368430 ~ 2375735 (-)
G114363 NA non-coding downstream 652352 1983652 ~ 1984149 (-)
G114304 NA non-coding downstream 758126 1751896 ~ 1878375 (-)
G114286 NA non-coding downstream 1101516 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 1122859 1512993 ~ 1513642 (-)
G114554 NA non-coding upstream 20649 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 348224 2996035 ~ 2998258 (-)
G114681 NA non-coding upstream 429230 3077041 ~ 3077760 (-)
G114720 NA non-coding upstream 492284 3140095 ~ 3141310 (-)
G114739 NA non-coding upstream 752621 3400432 ~ 3401938 (-)
G114549 LOC104962440 other downstream 27022 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 347639 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 568917 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 629865 1985149 ~ 2006636 (-)
AMCG00018077 NA other downstream 1709762 922278 ~ 926739 (-)
G114838 NA other upstream 1380205 4028016 ~ 4087031 (-)
G115020 NA other upstream 1938251 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 1998336 4646147 ~ 4651641 (-)
G115174 NA other upstream 2638575 5286386 ~ 5287873 (-)
G115183 NA other upstream 2652296 5300107 ~ 5304429 (-)

Expression


Co-expression Network