AMCG00018144


Basic Information

Item Value
gene id AMCG00018144
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2783062 ~ 2786522 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018144
GGGAAATGGTGTTCGCGCAGCCTTTGGGACGCACGTTGTGTTGTTTTGgctaaaaaggaaaacagcaaTGCCATTTTCGGTCACAGTGGGGGTGTGCACAGTTTTTGATGTCGGTCTTTGAACGTGCTTTGCTAAGATTTCGAGAGGATCTGATAAAAAAGCTATTGTCCTAAGTATTAGGTTATGCGGCCATAATCCGTGTTTCATATCTTAGATGCATGTTGTTTTGGGTTTCGGAGTTTAATGCATGGGTGttatttctgtgtataaaaatgACGTCTCCTTATTTTCTGAGGAAGGGCAGTGGTGTGTTAGCTAGGGACATGTGTAAAGCGGCCAACAACACGGAAACAGCGAAGAACAGAGAGCGAAACAAACATGTATCAGGTGTCAAAGCGGTGGCAGCCGCAGCGGAGAAAGATCCGGACACAGAGCCCCAGATATGGCTCTCTGAACAACCTCCAGCTGCAGGGTGTTCAGCTTCCCCAGCAGCTCAGACTCGGGCTCTCGGGTCTGAAGCAGAGACGGACGCAGGGAAGGCTCGCCCGGCCAGACCCCGGAGGAGGGCCCTCAGGGTGGAGTATGAAGCCGCTGGGGGTCCCGGTGTGGGGCAGCTGGAGCGAGACCAGGAGGAGGCCAAGAGGGACAGGTGGGAGCCCAGACACTTCTGGAAACAGCTGGAGAACATCCGGGAGATGAGGAGGAAGAAGGATGCGCCAGTGGACCACATGGGCGTGCAAAAGTGTTTTGACTCCGAGGCATCTCCGGAGGTGATGCGATACCAGGTTCTTGTATCGCTGATGTTGTCCAGCCAGACCAAAGACCAGGTGACCTCTGCGGCCATGGTGAAACTGCGAGGCCACGGCCTGTCTGTGGGGAGTATTCTGCAGATGGATGACAGGACCCTGGGGGAGCTCATTTATCCTGTGGGCTTCTGGAAGACGAAGGTAAAGTACATTAAGCAGACAACAGAAATCCTGCAGAAGCAGTACAACGGAGACATCCCGGACAATGTGCCTGACCTCGTTAGCCTCCCGGGAATTGGACCCAAGATGGCTCACTTGATCATGGATATCGCTTGGAACAAGGTGTCCGGCATCGGAGTGGATACTCATGTCCACCGCATCTCGAACAGGCTGGGGTGGATGAAGAAAAACACGAAGACCCCCGAGGAGACCCGAGTGGCACTCGAAGGCTGGTTGCCAAGGGACCTCTGGAGTGAAATCAACTGGCTGCTAGTTGGTTTTGGGCAGCAGGTGTGCCAGCCCGTCAACCCGCTCTGCTCAAGCTGCCTCAACCGGCACTGCTGCCCCTCCGCCAACACCAGCAAGGAGAGACGCCAGACCCCGTCCAAGAAACGCTAGCCGAAATCTCCGGCTTCATTGAGTGTTTGAACCTTAGAGACGTGGGGGGTGTCAGGATGATTGCGAGTTAAAACTGCCACGCCTGGGAAACCTGTGCTGCAggatgtttttccattaatacCTCATTTACTTCTACATTGTGTTAAAAACCATATCTGGGCTGGTGACCAGTGCAGGTGTTCGTGCAGCGTCCTGAAATGGGTCGGAGGCAGAGCAGGGGCAGCCTGACCAGACTCGTGTGTGAAAGGAGACATTTTTACACCCTTAGCACTTTCACCCTtttattgtaaaagaaaaaaaagtggtcAAGATGTTAGGTATTCAGCTGTTAACACACAGGGAAATGAATGTccatatatatagagagaaatagCCATCAattcatatatatgaatatggaTGAGTGATTCCTGTTTGATATCATTCAGGATTAAAGAGAAATTCAAgatattttgaattataaaactttatttcttatattacagttttatattgtaattttgtagTACAAAACAGTACCCTTGGG

Function

GO:

id name namespace
GO:0006284 base-excision repair biological_process
GO:0003677 DNA binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K10773 NTH; endonuclease III

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018144 True 1890 mRNA 0.50 6 2783062 2786522

Neighbor

gene id symbol gene type direction distance location
AMCG00018145 NA coding upstream 35669 2717502 ~ 2747393 (+)
AMCG00018146 NA coding upstream 65625 2698828 ~ 2717437 (+)
AMCG00018138 NA coding upstream 203705 2574395 ~ 2579357 (+)
AMCG00018132 NA coding upstream 318304 2449789 ~ 2464758 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding upstream 339534 2434456 ~ 2443528 (+)
AMCG00018149 LOC107753764,LOC107661878,LOC107718604 coding downstream 1851 2788373 ~ 2793873 (+)
AMCG00018150 NA coding downstream 27925 2814447 ~ 2827770 (+)
AMCG00018148 NA coding downstream 93046 2879568 ~ 2881846 (+)
AMCG00018155 NA coding downstream 125099 2911621 ~ 2915341 (+)
AMCG00018156 prkar1b,LOC104941536 coding downstream 138893 2925415 ~ 2934755 (+)
G114555 NA non-coding upstream 40376 2670907 ~ 2742686 (+)
G114553 NA non-coding upstream 114401 2668460 ~ 2668661 (+)
G114548 LOC104962440 non-coding upstream 173650 2609143 ~ 2609412 (+)
G114531 NA non-coding upstream 209195 2573637 ~ 2573867 (+)
G114485 NA non-coding upstream 365266 2416807 ~ 2417796 (+)
G114613 NA non-coding downstream 57783 2844305 ~ 2845453 (+)
G114624 NA non-coding downstream 78466 2864988 ~ 2867237 (+)
G114629 NA non-coding downstream 95910 2882432 ~ 2882968 (+)
G114674 ubfd1 non-coding downstream 315644 3102166 ~ 3103170 (+)
G114699 NA non-coding downstream 381641 3168163 ~ 3168982 (+)
G114551 NA other upstream 135288 2640846 ~ 2647774 (+)
G114518 NA other upstream 214124 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 516287 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 800496 1979046 ~ 1982566 (+)
G114330 NA other upstream 804335 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1399888 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1808411 4594933 ~ 4604105 (+)
G115049 NA other downstream 1974996 4761518 ~ 4763905 (+)
G115299 NA other downstream 3162941 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 3368966 6155488 ~ 6160616 (+)

Expression


Co-expression Network