AMCG00018146


Basic Information

Item Value
gene id AMCG00018146
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2698828 ~ 2717437 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018146
ATGGCAGAGTCCGCACTGTTGTCCACCATTGTCCCAAGTTTGGCCGAGCCGCTCTCTGGGTACACAGATGCTTTTCTCATCAAGGCTCTGGCGCATAGCCACGCCATGACAGAGCGCCCGAGAGATGTTTTTGCCTCTGCGTCGCTTGCTCAGATCTCAGTCGGAAACTTGAGTTTCAATCCATTTGTCTGTGATTGCAAACTGTTCCGATTAGTCAACTGGATTGCTGACCAGGTGGTGGAGGTGCACCAGGCCGAGTCGATGCAATGTGCCGAACCGCCGAAGGTCAAGAATCTGCCGCTCCTCAACGCCAGTCTGTCCAGTGTGATGTGCGGTGAGTTCTGGCGGTCGGGATGTTTTAAAGACTGTCATCAAAGGCTGAATTATGCCGCCTGCCTGTTGGACAAGAACACAGGGGTGAACGAGCTCGTCATTTTCACCGCATCAACTCCGGGCAACTACAACCACGACACCTGCAACAACCTCTGCTTCACCGCGGGGCAGCTGTACGGGGGCCTGGGCTCCAAGTCGGAGTGCCTCTGCAGCACCAACTCGGAGCCCAACTTCATCAGCGAGTCCCAGTGCTCGGCGGCCTGTGCGGACAGCCAGGTCATGAAGGTGTGTGGCTGGACGGTGGCCAATGAGGTCTTCTTGGTGGACTTCTCCGCCTCCTTCAGCCCGCTGCGGACCTTCAGCGTCCACGAAGAGGCCACACTCACCATCAGTATTTCTGTTATTGTAAGCACTTTATCGTGGGACTTTGGGGATCTGACCCCGTGGCTCAACACCACGGTGCCATCGGCCTCTCACAAGTACGCCCTGCCCGGGAAGTACCGGATCAAGGTGACACTCTGGGCAGGAAACAAGGACATCTCCATCCAGACCGACGTGGACGTAGTCATTCCCGGGCACCTGCAGCTGGAGTGTCCTGCCACCGTAACCACCAACAGCAGCGTCAATGTAAGCTTGACCAACTTGGACGGGACGGACGTGGACGTGGATTGGCGAATCATGTCCAGTGGCCAAGAAACTGCCAGAGAGCATCAGCACAGCCAGAAACAAATAAGACTCCTAAATGACGCGTGCTGTCATTGCCTTTCAGCACTGCCTTACTGCCCCCCCGGTGGCATTATGGACCCAGAGAGCAGCCGCTGTTTCAGAGTCTTCTGGGCCGAGTGCACCTGGCAGGAGGCTCGCCGGCAGTGCACCCCTCACGGAGACCTGGCTGTGCCGAACACCCCCCACCTTCACAGCGCCCTAATCCTCCACTTAGGAAACGACGCTGGCAGTCCTGGGTTCCTGCACTGGATGGATGGCTCAGTTCTGGAGACCAGCGAGGACCGGACGAGGGAGAGAGCATCAGTCTCGCCTGGAAACACCTGCGTCTTTCTCAACTCCACGGGCCAGCACTACACCCAGCCCTGCTCCACGAAGAGAGGCTTCGTCTGTGAATTCAGACCACAAGCCAGGATACCCGATGCGGCCGTGTTCATGGAAGGCTGTGCCGTTTTCAACGCACACAGGCCCTTCAAAACCGCAGTGACGGTGGCTTCCCTTGCTGAGCCAGTGAGGTTGGTGGAGCTCCTGATGTTCCCCAGCCTGTGGTTCAAACACGAAGGACATGTGTCGGCTCTGGAGCTCATTGTGAAGGACATCAGCAGCTCGGTCCAGGTCCGGTTCCAGGTGTACAGACCACACTGCAGGCAACTGGGCCTCCACCTCCTGCTGCCAGGGTGTGAGGATCTCTGCTCGCCCATTGCCGTGTGCCAGGGAGAGCAGGTGAACAGGACGATCAGCGCCTGCGTGGCACGGCAGCAGTGGTGCCCATACCAGTCCCGGTGTTTGCCCCTCGGCAGCCCCTGTCCCTCTAGCTCCTGTTCGAACTGCTCTGGGGCTGATTCTCTCCCCCGGGATGTCCTCCAGCCTGAATACAGCCTGGTCAACGAGGTGCTGTTCACCCTGCCGCCGGCCCCATCCACACATTACCTGGTAAGCACATTAGAGTCTTTACCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018146 True 2016 mRNA 0.58 9 2698828 2717437

Neighbor

gene id symbol gene type direction distance location
AMCG00018138 NA coding upstream 119471 2574395 ~ 2579357 (+)
AMCG00018132 NA coding upstream 234070 2449789 ~ 2464758 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding upstream 255300 2434456 ~ 2443528 (+)
AMCG00018133 NA coding upstream 265172 2433398 ~ 2433656 (+)
AMCG00018131 NA coding upstream 265846 2421265 ~ 2432982 (+)
AMCG00018145 NA coding downstream 65 2717502 ~ 2747393 (+)
AMCG00018144 NA coding downstream 65625 2783062 ~ 2786522 (+)
AMCG00018149 LOC107753764,LOC107661878,LOC107718604 coding downstream 70936 2788373 ~ 2793873 (+)
AMCG00018150 NA coding downstream 97010 2814447 ~ 2827770 (+)
AMCG00018148 NA coding downstream 162131 2879568 ~ 2881846 (+)
G114553 NA non-coding upstream 30167 2668460 ~ 2668661 (+)
G114548 LOC104962440 non-coding upstream 89416 2609143 ~ 2609412 (+)
G114531 NA non-coding upstream 124961 2573637 ~ 2573867 (+)
G114485 NA non-coding upstream 281032 2416807 ~ 2417796 (+)
G114484 NA non-coding upstream 286039 2410477 ~ 2412789 (+)
G114613 NA non-coding downstream 126868 2844305 ~ 2845453 (+)
G114624 NA non-coding downstream 147551 2864988 ~ 2867237 (+)
G114629 NA non-coding downstream 164995 2882432 ~ 2882968 (+)
G114674 ubfd1 non-coding downstream 384729 3102166 ~ 3103170 (+)
G114699 NA non-coding downstream 450726 3168163 ~ 3168982 (+)
G114551 NA other upstream 51054 2640846 ~ 2647774 (+)
G114518 NA other upstream 129890 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 432053 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 716262 1979046 ~ 1982566 (+)
G114330 NA other upstream 720101 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1468973 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1877496 4594933 ~ 4604105 (+)
G115049 NA other downstream 2044081 4761518 ~ 4763905 (+)
G115299 NA other downstream 3232026 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 3438051 6155488 ~ 6160616 (+)

Expression


Co-expression Network