AMCG00018149 (LOC107753764,LOC107661878,LOC107718604)


Basic Information

Item Value
gene id AMCG00018149
gene name LOC107753764,LOC107661878,LOC107718604
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2788373 ~ 2793873 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018149
CAGATATCGGCATCGACCTCAGGGGTGGACATGGCCCAAGAGCTGAAGCCGAGACTGTGCGTCATGACGAAAGGGGAGACCGGGTATGGGTTTCATTTGCACGGAGAGAAGGGGAAAAGTGGCCAGTATATCAGGAAGGTGGAGGCGGGCTCATCCGCGGAGGCTGCCGAGCTCCGCGCCGGGGACCGTGTGGTGGAGGTGAACGgggaaaatgtggaaaaagaaacGCATCACCAAGTGGTGCAGAGAATCAAGGCCCTGGAAAACGAGACTCGCCTGCTGGTGGTGGACAGAGAGACGGACGAGTATCTGAAGAGCCTGAGACTGACCTGCACTGAGGAGATGGCACGCACGGGCATTGTACTGACCACCCCTGGGCCCACACCACAGCCCGCCAAGAGGGAGAATGGCTTAAAGCAGCCAGTGATGCTCAGCAGTGAGGAGCACAAGCGGGTGCCCAAGAGAACGCCCTCGCAGAATGTCAAAAAGGCAGCGACGCCACTCAAGGTCAGCCCAGGAAGCACGTCTGAGGGCCTCCGGGCTTTGTGTCTGAGTGGTTAA

Function

NR:

description
PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018149 True 561 mRNA 0.59 3 2788373 2793873

Neighbor

gene id symbol gene type direction distance location
AMCG00018144 NA coding upstream 1851 2783062 ~ 2786522 (+)
AMCG00018145 NA coding upstream 40980 2717502 ~ 2747393 (+)
AMCG00018146 NA coding upstream 70936 2698828 ~ 2717437 (+)
AMCG00018138 NA coding upstream 209016 2574395 ~ 2579357 (+)
AMCG00018132 NA coding upstream 323615 2449789 ~ 2464758 (+)
AMCG00018150 NA coding downstream 20574 2814447 ~ 2827770 (+)
AMCG00018148 NA coding downstream 85695 2879568 ~ 2881846 (+)
AMCG00018155 NA coding downstream 117748 2911621 ~ 2915341 (+)
AMCG00018156 prkar1b,LOC104941536 coding downstream 131542 2925415 ~ 2934755 (+)
AMCG00018163 NA coding downstream 153561 2947434 ~ 2948696 (+)
G114555 NA non-coding upstream 45687 2670907 ~ 2742686 (+)
G114553 NA non-coding upstream 119712 2668460 ~ 2668661 (+)
G114548 LOC104962440 non-coding upstream 178961 2609143 ~ 2609412 (+)
G114531 NA non-coding upstream 214506 2573637 ~ 2573867 (+)
G114485 NA non-coding upstream 370577 2416807 ~ 2417796 (+)
G114613 NA non-coding downstream 50432 2844305 ~ 2845453 (+)
G114624 NA non-coding downstream 71115 2864988 ~ 2867237 (+)
G114629 NA non-coding downstream 88559 2882432 ~ 2882968 (+)
G114674 ubfd1 non-coding downstream 308293 3102166 ~ 3103170 (+)
G114699 NA non-coding downstream 374290 3168163 ~ 3168982 (+)
G114551 NA other upstream 140599 2640846 ~ 2647774 (+)
G114518 NA other upstream 219435 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 521598 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 805807 1979046 ~ 1982566 (+)
G114330 NA other upstream 809646 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1392537 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1801060 4594933 ~ 4604105 (+)
G115049 NA other downstream 1967645 4761518 ~ 4763905 (+)
G115299 NA other downstream 3155590 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 3361615 6155488 ~ 6160616 (+)

Expression


Co-expression Network