AMCG00018150


Basic Information

Item Value
gene id AMCG00018150
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2814447 ~ 2827770 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018150
atgctgTCAGTGACATATGAGCTCGGACGTCTGCTTGCCTTCACGgaaagtcACAGGCAGATGAAAGAGCATCACCCCCGGCTGTGTCATCTGCAAAGAGGGGAAACGGGCTACGGCTTCAACCTCCACAGCGAAAGGTCCAAACCAGGACAGTACATCCGCTCTGTGGACTCGGGGTCGGCAGCAGCCAGGGCAGGATTAAGGCCGCAAGACAGACTAATTGAGGTGAACGGCATCAATATCGAGGGCATGAAGCACTCGGAGGTGGTGGCATTCATCAAGGCCAGCCGGAGCGAGGCCAAGCTGCTGGTGGTCGACCTGGAGACGGACGAGCACTTCAGGATGATTGGGGTCACGCCCACGGAGAGCTTCGTGGCTCAACCAATAACTAATGGATCACCGAAGCCTCAGATGGGCCTCCCAGCCGAGGGGAGACGCCAGGCCTCGTTCTCCTCTTCCCACAGTGTGTCGTCCTCTACACAACTCTACAACACAACAATAAATGGCAGCTCCACGTCAGAGTCCTCCCACACAGACCTCCAGAGCAGTCCGGAGAAGGAGGCTGAGGCGGCAGAGGAGCAGGATCGTGACAAGGACCCCTTCATAGAGAGCGGCCTGCGGCTGAGCCCCACGGCAGCGGAGGCCAAAGAGAAAGCCCACGCAAAGCGGGCCAAAAAACGGGCACCGCACATGGACTGGAGCAAGAAACATGAGATTTTCAGCAACttttgaaacaaaagaaaaaagaaagaaaacaaaacaaaacctcccACTACCTGACTTGATTTTATATTGTGGAGAGggacaacacaaaataattcacaacaatagcagaaacaaaacagagaatcCCGTGATTACACGAGGGTGGACACGAAgagaactttaaaaaaaaattgcgaACAGATTGAAGCAAAAGAAAGTCTCCTTGACAGACAGAAAGCGCGACCAAAGTGGCTCACCCTGTCCCGTGCATCAGGGGTGCGAGGACGTGCGCCTAGGTTACCTTATTATCATGTAGAGGTttgttatttactgtatgtgACGTATTTACACATTAGCGGATGAACAGTGCATTACACCTCACGCCTTCtttctttgattgttttcacTTCGACGACAATAACATCACCtctttaagatttgtttttttattaaccgTAGATTTCTCTCcagaaaacaataaac

Function

GO: NA

KEGG:

id description
K13358 SLC9A3R2, NHERF2; sodium/hydrogen exchange regulatory cofactor NHE-RF2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018150 True 1188 mRNA 0.50 6 2814447 2827770

Neighbor

gene id symbol gene type direction distance location
AMCG00018149 LOC107753764,LOC107661878,LOC107718604 coding upstream 20574 2788373 ~ 2793873 (+)
AMCG00018144 NA coding upstream 27925 2783062 ~ 2786522 (+)
AMCG00018145 NA coding upstream 67054 2717502 ~ 2747393 (+)
AMCG00018146 NA coding upstream 97010 2698828 ~ 2717437 (+)
AMCG00018138 NA coding upstream 235090 2574395 ~ 2579357 (+)
AMCG00018148 NA coding downstream 51798 2879568 ~ 2881846 (+)
AMCG00018155 NA coding downstream 83851 2911621 ~ 2915341 (+)
AMCG00018156 prkar1b,LOC104941536 coding downstream 97645 2925415 ~ 2934755 (+)
AMCG00018163 NA coding downstream 119664 2947434 ~ 2948696 (+)
AMCG00018158 prkar1b,LOC107653458,LOC107661853 coding downstream 122121 2949891 ~ 2965319 (+)
G114555 NA non-coding upstream 71761 2670907 ~ 2742686 (+)
G114553 NA non-coding upstream 145786 2668460 ~ 2668661 (+)
G114548 LOC104962440 non-coding upstream 205035 2609143 ~ 2609412 (+)
G114531 NA non-coding upstream 240580 2573637 ~ 2573867 (+)
G114485 NA non-coding upstream 396651 2416807 ~ 2417796 (+)
G114613 NA non-coding downstream 16535 2844305 ~ 2845453 (+)
G114624 NA non-coding downstream 37218 2864988 ~ 2867237 (+)
G114629 NA non-coding downstream 54662 2882432 ~ 2882968 (+)
G114674 ubfd1 non-coding downstream 274396 3102166 ~ 3103170 (+)
G114699 NA non-coding downstream 340393 3168163 ~ 3168982 (+)
G114551 NA other upstream 166673 2640846 ~ 2647774 (+)
G114518 NA other upstream 245509 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 547672 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 831881 1979046 ~ 1982566 (+)
G114330 NA other upstream 835720 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1358640 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1767163 4594933 ~ 4604105 (+)
G115049 NA other downstream 1933748 4761518 ~ 4763905 (+)
G115299 NA other downstream 3121693 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 3327718 6155488 ~ 6160616 (+)

Expression


Co-expression Network