AMCG00018166


Basic Information

Item Value
gene id AMCG00018166
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3105020 ~ 3122175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018166
CGTACATTGTTGTGGACAATACGCTGGCTAACTGCATCTTCTGTCAGAAGCCATGACAGGCTGTCGCAAGCGGAGACTCCAGTGTCTGCATGTTTATGAGGCTGCAAACAGCACGTCTATCGACCATGGCAGACTTCAGGACGTTCAATGTGCTCATTCTGGGAATAGGGTTCATGCTGCTGTTTACTGCCTTTACAACATGCGGAAACATTGAAcaaACCGTTATTAAAAGCTTGGCCAACACTACCTTTGAGGGCAGTGGTTACAACAGTCTGGGTATTATATATGGagttttttccatttctaatTTACTGGCCCCCTCTGTCGTTGCAATAATCGGACCACGGTTCACTATGATGCTTAGTGGATTATTGTACAGCGGTTACATAGCTGTATTTATTCTGCCTGCCACATGGTCTTTTTACTTGACATCGTTTCTCATTGGTCTGGCAGCAGCCATGCTGTGGACGGCTCAGGGGAACTTCTTGGTCCTAAACTCCGATGCCACGACTATCAACAAGAACACAGGGATGTTTTGGGTGCTGCTGCAGTGCAGGAAGATGGTGTTTGTGGTCTTGCTCATCCTCTCTGTGCTGGGAACACTGAGCTTCATTATCCTGAGGAAGAACCAGGATGACGAAGAAGCCCTAAATGAGGGAGAGGCCGACTCGCTGCTTTCCGCTCACATGATTTTTAAGCAGAGAGCAGTTTCTGCTGTAAGAGATGCCAGCACAGAATTCAGAACGATGATGAACATGTTTTGCACGAAGACCATTCTTCTCCTGAGTTTCGGCATGGCATACAGCGGTCTTGAGCTGACATTTTACAGCGGTGTTTATGGGACCTGCCTTGGAGCCACGGCACAGTTTGGACCCTCAGCCAAAGGCTTAATAGGGCTCTCTGGGATACTAGTTGGAGTCGGAGAGATAGTCGgtggTGGCTTATTTGGACTGTTATGTAAGAACAACCGGTTCAGACGCACCTCTGTGGTCTTCCTGGGGATGGTCGTGCACTTCATCgccttttatttaatctttctgATCATCCCTGAAGATGCCCCCATTGTGTTTGAAACCGACACACAGCATGAACCCTATCTCATGCCCAGTGTGCCCATCGCCTTGATGTGCAGTTTCTTGCTGGGGCTAGGAGACAGCTGCTTCAACACACAGCTCTACAGCATCCTGGGGTGTCTGTACGCTGAGCAAAGCTCACCTGCGTTCGCCATCTTCAAATTCATACAGTCAATTTGTGCTGCAGTGGCATTTTTCTACAGCGGTTATCTCTTGCTGCCCTGGCAGCTTCTTATAATGGTCATCCTGGGCTTCACTGGAACTCTGTGTTTCTTCCTGGTGGAAAAGATGCAGGATATATCTACCGCTCTAGCGCTGAAGAGACACTGTCGGGCACAGGGGACTGGGGCCTCTAGTGTCCACTGGAGAGCTGCAGACTGCCATACGGTTAACCATGGTGTGTCAGCAGGGGACAGCAGGAGATATGTGTGCACTGAAAGCGAGGGGGTACGGGTGAGGTTTGCACCTAGTCCCACGGGCTTCCTGCATCTGGGAGGACTGCGCACCGCTCTCTACAACTACATCTTTGCCAAGAAGCACAGAGGGAGTTTCGTACTGAGACTGGAGGACACCGATCAGAGCAGGCTGGTCCCCGGGGCGGCGCAGAGCATCGAAGACATGCTGGAATGGGCAGGGATACCGCCAGACGAAAGTCCACGGAGAGGTGGTGCGTACGGGCCCTACCAGCAGTCCCAGAGGCTGGAGCTGTATCGAGAGGCAGCGCAGACCTTGGTGAGCAGAGGGATGGCCTACCGCTGCTTCTGCAGCCCTCAGCGCCTGGAGTTACTGAAGAAAGAGGCCCTCAGGAGCCGGCAGACCCCCCGgTATGATAACCGATGCAGACACTTGCGCTCTGACCAAGTGGAGGAGAAGCTGGGCCGTTCGCAGCCCCACGTGATCCGCTTCCGCCTGGAGGAGGGCGTGGAGCCCTTCGAGGACGTGGTGTTTGGGTGGAACAGGCACGAGGTGGCGGCCGTGGAAGGGGACCCCGTGATCATCAAGGCGGACGGCTTCCCCACCTACCACTTGGCCAACGTGGTCGACGACCATCACATGCACATCAGCCACGTGCTGCGAGGCACAGAGTGGCTCATCTCCACCTCCAAGCACCTGCTCATGTACGAGGCCTTTGGCTGGCAGCCCCCCACCTTCGCCCACCTGCCCCTGCTGCTGAACAAAGATGGCAGCAAGCTCTCCAAACGCCAGGGGGACATCTTCATCGAGCACTTTGTCGCAGGGGGCTATCTGCCCGAGTCTCTGCTAGACATCATAACGAACTGTGGCTCAGGATTTACCAacaatcgACCTGGCAGGACACTGGATGAGTTGATCTCTGAATTCGATGTTACCAAAATCACAACACACTCTGCGCTGCTGGATCTTGACAAACTTCCTGACTTCAATAGGATTCATTTACTCCAGAGAATCGGTGATGATGGCAAGTGCAGGTCCCTGGTCAGAGATCTGCAGGGTCACATTGAGCAGGTTTACGGGCCGCAGATCGAGGATAAGGATGTTCTGCACCAGGAATATATTGAGCGCATTCTTCAGCTACGGAAGGGCCACATAACCTATCTTCAAGAGCTGGTGTCTCCTGCCTATTCTTACTTGTGGGTGAGGCCCACAGTTTCACAAGGCCAGCTGCAGCAGGTGTCTGCAGAATTCAACACCATCCTTGCTCTGGTCTTAGAATTGATTCAGACTGTGGACTTCACTCCCCAAGCCCTGAACCTGGAGTTGAAGGGCTTGCAGCAGAAGACAAAGTCAACGAAATACAGCGCGACAATGAAACTCCTGCGCCTCGCGCTCAGTGGACAGCAGCAAGGACCAAGTGTTGCTGAAATGATGATATCTTTGGGGCCGAAAGAAGTATATCACCGGTTACAGAGAGTGCTGAATTGctgatgaaaaatgaaaacaaaggacTGTAACCATAGATTGAAACCCATTATTGCtctgtgtacatatttattatttttccaacaaACAAGCTTCTAAATTAAAAGTGGATTGTAA

Function

GO:

id name namespace
GO:0006424 glutamyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0004818 glutamate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01885 EARS, gltX; glutamyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018166 True 3089 mRNA 0.52 21 3105020 3122175

Neighbor

gene id symbol gene type direction distance location
AMCG00018159 NA coding upstream 109465 2976735 ~ 2995555 (+)
AMCG00018158 prkar1b,LOC107653458,LOC107661853 coding upstream 139701 2949891 ~ 2965319 (+)
AMCG00018163 NA coding upstream 156324 2947434 ~ 2948696 (+)
AMCG00018156 prkar1b,LOC104941536 coding upstream 170265 2925415 ~ 2934755 (+)
AMCG00018155 NA coding upstream 189679 2911621 ~ 2915341 (+)
AMCG00018164 NA coding downstream 2445 3124620 ~ 3139596 (+)
AMCG00018165 NA coding downstream 32847 3155022 ~ 3160029 (+)
AMCG00018173 NA coding downstream 517747 3639922 ~ 3663201 (+)
AMCG00018172 LOC103021790,LOC108433116,LOC108256804,LOC107741797,LOC107574133 coding downstream 558546 3680721 ~ 3681332 (+)
AMCG00018174 NA coding downstream 710402 3832577 ~ 3849146 (+)
G114674 ubfd1 non-coding upstream 1850 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 222052 2882432 ~ 2882968 (+)
G114624 NA non-coding upstream 237783 2864988 ~ 2867237 (+)
G114613 NA non-coding upstream 259567 2844305 ~ 2845453 (+)
G114555 NA non-coding upstream 362334 2670907 ~ 2742686 (+)
G114699 NA non-coding downstream 45988 3168163 ~ 3168982 (+)
G114731 NA non-coding downstream 114868 3237043 ~ 3237244 (+)
G114806 NA non-coding downstream 893903 4016078 ~ 4018982 (+)
G114867 NA non-coding downstream 1071167 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 1072102 4194277 ~ 4198050 (+)
G114551 NA other upstream 457246 2640846 ~ 2647774 (+)
G114518 NA other upstream 536082 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 838245 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 1122454 1979046 ~ 1982566 (+)
G114330 NA other upstream 1126293 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1064235 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1472758 4594933 ~ 4604105 (+)
G115049 NA other downstream 1639343 4761518 ~ 4763905 (+)
G115299 NA other downstream 2827288 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 3033313 6155488 ~ 6160616 (+)

Expression


Co-expression Network