AMCG00018170 (hs3st4,LOC103360498,LOC107568293)


Basic Information

Item Value
gene id AMCG00018170
gene name hs3st4,LOC103360498,LOC107568293
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3399293 ~ 3399919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018170
ATGCCCTCGACGCTAGAGGGGCAGATCACGATGGAGAAGACGCCCAGCTACTTTGTGACCAACGACGCCCCGAAGCGCATCCACTCCATGGCCCGGGACACCAAGCTGATCGTGGTGGTGCGCAACCCCGTGACCAGGGCCATCTCGGACTACACCCAGACGCTGTCCAAGAAGCCTGAGATCCCCACCTTCGAGGTGCTGGCCTTCAAGAACCGGACCCTGGGGCTGATCGACGCGTCCTGGAGTGCTCTGCGCATCGGGATCTACGCGCTGCACCTGGAGAGCTGGCTGCAGTACTTCCCGCTCTCCCAGATGCATTTCGTGAGTGGCGAGCGGCTCATCGTCGACCCGGCCGGCGAGATGGCCAAAGTGCAGGACTTTCTGGGACTCAAGCGGATCGTGACGGAtaaacatttctatttcaatAAGACCAAGGGATTTCCCTGCTTGAAGAAGCCCGAGGACAGCAGCGCGCCACGGTGCCTGGGCAAGTCCAAGGGCAGAACTCATCCCAAAATAGACCCTGACGTCATTCACAGACTGCGAAAATTTTACAAGCCCTTTAATGTGATGTTTTACCAAATGACGGGGCAGAACTTCCagtgggagcaggaggagagGCGGTGA

Function

symbol description
hs3st4 Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in forebrain; hindbrain; olfactory epithelium; and spinal cord. Orthologous to human HS3ST4 (heparan sulfate-glucosamine 3-sulfotransferase 4).

NR:

description
heparan sulfate 3-O-sulfotransferase 4

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K09678 HS3ST4; [heparan sulfate]-glucosamine 3-sulfotransferase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018170 True 627 mRNA 0.58 1 3399293 3399919

Neighbor

gene id symbol gene type direction distance location
AMCG00018169 NA coding downstream 232130 3161231 ~ 3167163 (-)
AMCG00018167 NA coding downstream 248837 3142474 ~ 3150456 (-)
AMCG00018168 ubfd1,LOC106601113 coding downstream 295851 3099730 ~ 3103442 (-)
AMCG00018162 NA coding downstream 323657 3073189 ~ 3075636 (-)
AMCG00018161 NA coding downstream 330739 3061613 ~ 3068554 (-)
AMCG00018171 NA coding upstream 81789 3481708 ~ 3483903 (-)
AMCG00018176 NA coding upstream 378256 3778175 ~ 3809520 (-)
AMCG00018177 cog7 coding upstream 415616 3815535 ~ 3826564 (-)
AMCG00018187 tsr3 coding upstream 614012 4013931 ~ 4018824 (-)
AMCG00018188 NA coding upstream 625824 4025743 ~ 4026925 (-)
G114720 NA non-coding downstream 257983 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 321533 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 401035 2996035 ~ 2998258 (-)
G114554 NA non-coding downstream 730632 2668460 ~ 2668661 (-)
G114456 NA non-coding downstream 1023558 2368430 ~ 2375735 (-)
G114739 NA non-coding upstream 513 3400432 ~ 3401938 (-)
G114785 NA non-coding upstream 508100 3908019 ~ 3910399 (-)
G114915 NA non-coding upstream 895392 4295311 ~ 4352363 (-)
G114941 NA non-coding upstream 986014 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 1189376 4589295 ~ 4590068 (-)
AMCG00018142 NA other downstream 751482 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 789814 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 1110431 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 1331709 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 1392657 1985149 ~ 2006636 (-)
G114838 NA other upstream 628097 4028016 ~ 4087031 (-)
G115020 NA other upstream 1186143 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 1246228 4646147 ~ 4651641 (-)
G115174 NA other upstream 1886467 5286386 ~ 5287873 (-)
G115183 NA other upstream 1900188 5300107 ~ 5304429 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location