AMCG00018174


Basic Information

Item Value
gene id AMCG00018174
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3832577 ~ 3849146 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018174
gcactAAATCAGACCCCAGTACTcgggggctgcagtgtctgctggtttttgatccaacaGGAGATCAAAATTACTTCATTAATGGTATTATTTACTCTGGTaggcttattttatttgtatacccgacaatttgttgatgactcaaaacactgaacacacacaacatttcagagtctggagagaagtatTCAATTCATCCAGtctattgtttaattagacTAATTAAGGAGCTAacagctgggctggaacaaaacccagcagacactgtggccccccaggactaGAGTCTGACATTCACAGTCACTGTCAATGTTAACTTAATTCTAAGCCACATTTGTCTGCAATAAGTATAAAACAGATATAATCATATGTTGTTAACACTGTATAACTGATCACAATTAATTCGAGATTCATACATATTAGTATTGGATCACGAATACATCACGTATTTGaatgaacatgttttaatgtgtacacCTTGATACAAATAAACCATATCCCCAAGATTTACATAGATTTAAATGTCAGCACACATGGACGTATATACTTGTAGGAGAAGTCGAGCACTTTGCATAAGTTAACCCATAAACAGGCAGGACGTCTTGCTGCAGCATGAATATTTAACTCGAAATTTGCTGCAAGGGGATCAGAAACGAAACGGCAGCTTTTGCAGCACTGACGTGTGACCTTTGAATCGAAGCAGGCAGAAGTCACCCACTTGTTTCGGAGACTAGTGCATTATTTTGCAGAGCTGGAGAAATCTGTGTGGGCTGGATGCATGCATCGTTATGAAGTGACTTCGGTGAAACCACATCCTCGCAGCAGAGCAGCCGGAGCAGCCGGAGCGCAGAGCTGTGACGTCGCTCTACACGCTGCCTGGCCGGCGCGGCGCTCCGAGGAGCCACAGTCGCTCAGGGGACCGGGGCATGACGGCAGCGGGAGCGGCTTTAACTGCCCCCATCCAGACATGCACTGAAACGCATCCTTCTGGATTGCAGCCCTGCAAGAAAGAAAACGAGGTTCCCTCAACATCTTCGATGATTGTGTAGACTTTAAAACACCTCTTCAAAAACCACCTCCACCTTAGACAAGACATCATGGAAGTGCTACAAATGACCATAATTTCAGTTCTCCTTTGTGGTCTGATTCAACACACTACGGGCTTCTGCAATGTCACCTGCACTAATGACTACCTTCAGTCTCTGAACTGCACCTGCGCAGGCCAACAACCTGCCCCCTCCTATCAGCTCCTGGGAAATTGCTCGTACGAGGACGGCTCAGCAGAATCAAGCTGTGAGATCACAACTGACCAGAGATGGTGTGAGCTCAGCTTCAAGGGCCACTGTACAGACCTGAGTGAGTTCCAGGGCTGCCACGTCTGTGTGAAGAACAGCAACGTGGAAGGAAGTATAGACCCCGAGGACTGTACCGATGTCTATTTAACAAGCAGCATAAAACCGAAGGCCCCCGAAAACCTGACTCTATTGGAGAACCAGAGTAACTATAATCTGTCCTGGAAAATGTGGTACACAGAGGACAGAGAAGGCTACTACCTGGTTAACAATCTTAGGTATGAGGTGCGAATAAAGGATACATCTTCAGAGAAGCTGACGGATTTCCTGGTGAACGAAGACAGACGATACCTGGTCATTCCCCACAGCCGTCTGGGCAAAGGAAGAGAGTACACTGCCGAGGTCCGGGTCAGCTTGATTCCAGACTTTGATTACTCGGGTCCCTGGAGCGAGTGGAGCCCGGCCTACAAGTGGAGAACACAGTCTGACGGCTGGCAGAGTTACAGCCTCTATGGCGTCTTGCCATTTGTTGCGTTTGTGGTGATCCTGTGTTACATTGGAAAAAGgAGACTGCAGAAGAAGCCATACCTGCACAATTACATCCCCAGCCCCGAAGACTTCTTCAAGCCCCTCTACCTCCTGTATGATGGGGATtttaagAAATGGGTCGGCCCCACCTGCACGTTCTCAGCCTGCGACTTCCTGGAGAAGAACACGGTGGTCCCTGTGGTGGACAGCAAGCACAGGACCCTGGAGAAGCTGTGTGAGATCGAAGGCATGACGAATAGCAAGGACAGTCAGGGCCGGGGTGACGCCTCCTTCTTGAGTCTGTCCACAGAAGGGGGCTTCAAGCTCTACTTCCCCGGAGGCTCAGGGCAGACAAGGGACAAGTCCACTGGCCACATCTCCATCGACACTGTCACTGTGTGGGGCGAGGAGGGCCTGGACTGCCCGGATTACAGCAGCTCTGGGGGAGAGGACCCCTACAGGAGCTGCCGCGGGGGCCACGAGTGCTTCGGCTACCCACCCTCCAGCCTGGAAACGGACGGGCTGCTCAGCTCTGGCGGCAGGAGGAGCGAGGTCGTCTCCTGTGGCTGCGTTTCCCTGGGCTACAGAAGAGGCCAGCAGGCCGGGCAGGATGGGGGGGAAGGCTCTGGTGACTCGCCCGGCCCGGTCGGGCTGTACAGCCTCCACGGCCCCAACGGGTGGCAGCTGGAGTCTGGAGACAATGAGTCCGAGAGGATCTCCCTGGATTCCTTTGTGTCCAACGACCGATCTGAAGACGACGGCTACCCCCGGGTGGGCCTGGACTTGGACACCATCGACAGTGGGTTCGCCGAGTCGGACTGCAGCAGCCCCGTCCACTCGGACTTCAACAGCAAAGAGCCGATGAACCCGGCGGTGTTAAATGATCAGGAGCTGGCGCAAACAAACTACGTCAAACAGTGGGTGGCGTATACCTCCAAGTCCTCAGTGGAAGAGAGTTCCAGCAGCTGAAGTGCGGTGTGACACAGCCCGGTATGCACAGCTGGGCCCCCATGCCAGGTCTCCGGTATGTGCGGTGGGCCACCAGGACAGCCCCTGCGCTGGTCCTCCACAGCACAATCCCCAGGGACAGAGATGTCTTCGTCCAGTCTAAGGTTATTGCATTATTGTTTGCCCATGCCTTTCATAATGTGGTGCAGCAGTCAATCATGCCTTGGTCACGGAAAGACAACACTCGTCATTTCATCACCTGTCCCAAGACAGAGCACCTGCAGCTTGTGGAGAAACGAAAGGTGCTCCCAGAACATACTTTACTAACAGACATTGTTAACTGACGTGATACAGCGTTCTGTGAAAGACTTCACCTTGTATTCCTGGAACTCTAtaggctggtttcacagacccacatCGGTCTTTAACTACCCACAGTCTGGTGCTTATCCCGGTCTGTGAatccagctgtgtgtgtatggaacCATACTAGTGTCTTTATGTTTgtataaacagtattaataaCATTGGAACCGAAGTATGCACAGTCTGACTTCACTATAGCAAAATCCCGTTCATCATGATAATCCATCTTAATTGCAAGAACCTTTTTATTCCCCTTGAGGTTTGCCCTGTCGCGTCCCGCACTTTATGTCATTGCACGTCACTGAACTTCCTGCAGGTTGATGCCCTTCTTTCAAGGTCcaattaatattaaactttCAGGGACTTTAACAGAGGTGATGGCCAGTAAAAGTAAATAACATATTGTTGTCACGCAACCTAACTTCTAACCTTCTACAGTTCTGTTTTAACCATCCCCAACCTGTTCGTCAAAGTGAAGTTGAGCTGTATCTTACTTTGGTGTCTtctctgatttaattttattctctagattttggggagggggtggttgccatttgtttattcattaatggGTTTCTTTTCTCCATGATTTAGTTTTCGTTTTCGTTTTTTCACACaatctacaataaaataaaacacacagttaCTGTACGTTGATTAACACGATACTCAATAATAGACTAATAAAAAGAACTGACCAGATGTTTTCTTATGTGTTGTTTTGAATATTGCACTTATTGGGACTTGGTACTGTAGATTCAAGTTGAAAGTTATACTTTATAGGCTCTTTCATTACCTCCACTGCACTGCCCACCCCTCACAGAAAGTGGGCCTGTTTGTCAATAACAAAGGCGCCATCTCTGTGTTTTGTCcacaagaaaaagagaaaaacataatcTGTCTGGCGATAATTATTTAGTAAATATGATTGTTTACTGTCACATTGCAATCATTTACACTGTGATTTCGAGAGACGCAGGAGTTTATACCCTGTGGGTGGAATTTTCTAAAGTTATCAGAGTTGAGATGTGCAA

Function

GO: NA

KEGG:

id description
K05075 IL21R, CD360; interleukin 21 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018174 True 4168 mRNA 0.48 9 3832577 3849146

Neighbor

gene id symbol gene type direction distance location
AMCG00018172 LOC103021790,LOC108433116,LOC108256804,LOC107741797,LOC107574133 coding upstream 151245 3680721 ~ 3681332 (+)
AMCG00018173 NA coding upstream 169376 3639922 ~ 3663201 (+)
AMCG00018165 NA coding upstream 672548 3155022 ~ 3160029 (+)
AMCG00018164 NA coding upstream 692981 3124620 ~ 3139596 (+)
AMCG00018166 NA coding upstream 710402 3105020 ~ 3122175 (+)
AMCG00018175 NA coding downstream 19239 3868385 ~ 3877825 (+)
AMCG00018179 pdpk1,LOC100380750 coding downstream 51367 3900513 ~ 3910188 (+)
AMCG00018178 NA coding downstream 81375 3930521 ~ 3943520 (+)
AMCG00018180 ube2i,LOC107677193 coding downstream 100595 3949741 ~ 3956739 (+)
AMCG00018184 baiap3,LOC107550313,LOC107719179,LOC107703313 coding downstream 131546 3980692 ~ 4013068 (+)
G114731 NA non-coding upstream 595333 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 663595 3168163 ~ 3168982 (+)
G114674 ubfd1 non-coding upstream 729407 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 949609 2882432 ~ 2882968 (+)
G114624 NA non-coding upstream 965340 2864988 ~ 2867237 (+)
G114806 NA non-coding downstream 166932 4016078 ~ 4018982 (+)
G114867 NA non-coding downstream 344196 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 345131 4194277 ~ 4198050 (+)
G114888 NA non-coding downstream 449492 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 537034 4386180 ~ 4386889 (+)
G114551 NA other upstream 1184803 2640846 ~ 2647774 (+)
G114518 NA other upstream 1263639 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 1565802 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 1850011 1979046 ~ 1982566 (+)
G114330 NA other upstream 1853850 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 337264 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 745787 4594933 ~ 4604105 (+)
G115049 NA other downstream 912372 4761518 ~ 4763905 (+)
G115299 NA other downstream 2100317 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 2306342 6155488 ~ 6160616 (+)

Expression


Co-expression Network