AMCG00018181 (LOC106940169,LOC103155118,LOC106907654,LOC103462289)


Basic Information

Item Value
gene id AMCG00018181
gene name LOC106940169,LOC103155118,LOC106907654,LOC103462289
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4020716 ~ 4027794 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018181
TCGCAGGCGGTGCCGCGTTTCTGCCGCTTCTGTAtttgatgttattgttttaagatTGGATACAGGATGGGATTAGACGTGTTCATTTCTGGATCTGTGCGTCGTGGTTGGCACATCCTGGCGCTGCTGTTTGTGGCGCTGCAAGTGCTGGTCTGCTCTGGGGGGAAGATGAAGATCGTGGAGGAACCGAATACATTCGGGCTTAACAGTCCTTTGCTGGCTCAGGGCAACAGGCTGCAGCCCAGGGCGACTCCATCTCCTGTGTCGGGTCCAGCTCACCTGCAGAAATTAGCCGGGAAGTGTTTCAGCTTCATAGAATCCACGTACAAATATGAGTTCTGCCCATTCCACAACATCACCCAGCACGAGCAGTCCTTCCGCTGGAACGCCTACAGCGGGATATTGGGCATTTGGCAGGAGTGGGAGATTGTGAACAACACCTTCACCGCCATGTGGATGAGAGAAGGAGACTCCTGTGGCAACaagaacagacagacaaagGTCCTCCTGACCTGTGGGCAGAGCAGTAAGCTGGCACAGGTGTCGGAGCCCAGCACCTGCGTTTACTCACTGACCTTCCAGAGCCCCCTGGTCTGCCACCCACACGCGCTCTTAGTGTATCCAACACTCCCCGAGAGACTGCAGGAAGACTGGAACGAAGCCGAGCAGGCCCTTTACGACGGGCTCATCACAGAGCAGGGCTACAATAAGATGCTGAAGGAGATCTTTGAAGAGGCCGggtttctgaaaaacaaaaagctgaagGAGAAGCAGCCGGTCAGCAATCCCTCGAGGAAGTTCGATACCCTGGAGCAGTGCGGTGAGGAGGTCCGGAAACAGACGGAGGAGGTGGAGAGGCTGAAGGCGCTGCTGTCTCAGCACGgcatacagcacaacacacagccAGgagccacagagccGCCTAACAGCCATCAGCCCACAACCACCACACCGGCATCCAAAGAGAGGCACCTGCGTGGCGACACAGGGCTGCTAAGCGACGTGCTCTGAGGGAGACGAGAGGAGCGCGGGAGAGAGGCGCCCACAGCCCCGGGAATGAACAGAGACTGCTGCAGAAAGACATATTTTGTAGTGTGGGAGGAGGTCTGTCCTTAAACAAACTTCCAGGGTCACTGCTGTTCACATGATCAGCATTAAGAGTTAAAATATGGTTGGTTTGCAGGGCCAAATGAAAATTGCACATTCACGATTGTGCAGCAGAACGAGACTGGGGTCTTCCTGTTTATGTTCCAGAGATAACGGTCAGTGCTCAGCGCAGGTGCCAGGGACAGGAAGACAGGCAGTGTAAAGTAGCTGCTCTGTGCTGGTTGTTGACATTTAAATCAGTGGCATTACAACATTTCTGctgtgcagaaaaacaaaacaaaaaatggtaaCCCTTTTGTATAGTCGGCAAACTTTAATGTCTTAAAAGTAATGCTATGCTGTGATTTTGGATTAACATGGAACGTCTGacctgttaaattaaaaaatcttgtAAATGCTGTGCAGGTCTTTTAAGTAAACCCGtgcaaaacagtttattttcacCCCAAAGTAGAGAATATAATGTGTTTAATCCTGCGCCTCATTTGGACAAATCCCTGCTAAACCACCGCCTTCTCCgattattaaaagtaattaaaagtgtgTGACTCGCTCTGTGATCCAACTCGGTCACCGCAGACGTGATGTTACAGCTCAGTTCTCGCACACGGTGGCAGAATTCATCTGTCTCCCCCCAACTGTGTCCTTATCCCCCACTCGTCTGATCACGGAGACCCAAGCATTGTTAGAAGATCACTGCAAACTTTCTTGAATGGTGCTTTTTAAAGCGTTATCTACCATGCTGGGACAGAGTCGGAAGTGTCCCCATCTCATGCGCCTGGACGTGACCCGACGGCACAGTTTTTCAGAAAGGAAATCTGTTCAGAGTCTCGTGTCTATAATTACAATGAGAAAGCCGACACTGCACTAGCGGAGGGTGGGAGTAAGCCAGCTCTAATATTATCCTGTGAGGCACACAGCAAGGGACTTCCCCTAGCATGATGGAATCAATGGTATTCGACACATTTAACCCAGAACTCAGTTTAAAGATGAAACAATTACAGAAGGGGGTTGTGATTCACCAGTACAGACTAACACCACATGCCACAGAGGGACGGTCACAGAACGGCTGTCCCAGCTCCCTCCCGTCCGTCGCCATCAAAGCAAACTAGAGCCGCAGTTCAGGATTTGGAAACGTAGATCAGAGACATCTAGTCACTACCCAACGCAGCAAGCATCAGTTATCTCCCGTCTTGCGCTCTACAGCAGAGTCACAGCTACCAGTGCCACCCTGGTCCGCCCCCGCGCTCCGGATCTCGGTCAGCAGGCCTCTCAGACACCGGGTCTCGGCCGCCAGCGAGGCCAGTCTCTCCCGCAGCGCCTTGTTCCTGCAGAGCAGCTCGCCCAGCTCCCCTTCCAGCACTGCTCTCTTGGTCCTCTGCTTCTGGCGATACCGGGTCGCTGCGGTTTTGTTCTGCTCCTTCTTCTTGTGCTTGCGGTTAGGGTTGGCAGAGGAGGGAGCGGCAGTGGCCTCCGTCACTCTACACGGAGAGCCGCCCCCACGGAGGATTTTGGGCGGGCAGTGAGCGGGATGTTTCAGCGGTACCTGGCCCCGGTCATCACACTCTGAACTCTCGGCGTCGGAGGGAGCTGCCGGCCCGGTGCTGCTCAACAAAGAATCGTAGGCCAGTTTCACCACCCTCACGGGTGCGTACGCCAGGAGCCTGCTGGGCTGAGCGGAGGCCAGGGCATACGGGCCGTTGGCTCTATGCACCGGAGAGTCCGGGGAGCGGGGAGGCGTGTAGGGAGCCACCTGATCGCTGGCCCAGTCCCGCCACGCTGGCGACCCTCCGTCTGCAGGAGGAGCGGCTGAGATTTCGGCCTGGACTTTCACACCCCTCCGCACCCCCCGCGGGAGGTCCTCGGAGGGCATCGGCCCATCTTCGATGAGGCTATCCAGGAGGTAGACGTCCATCCTCTCGCCCATCCAGTCCATCTCAGAGATGCCTGCAAAACCAGACTGGAGGAGACTGTGAGAAGCTGACGCTGCCCCCCCCTCTGGCTCGCAGTGTCCACCGGGACCAGTCAGGGCACCCAGCAGCATCTCGGGCTCAGCGGTCAGTGAAACAAGTTCTGGATACAGGCTCTCTGGCCACAGCGTCTCTGTCCACTCCATGGGCGCGGGTCAGGGCGGCGAAGGCTCCGGCTGGGACTGACCCACGGGGGTAAGAGGTCTTCTCCGGCAAGGCACGAGTCACAAGGTGGGTGGAGGTGCCATCGTGAAGCTCCATGTTGGGGTGTGGGTGCTGGACGGTCTAGGCGAGGGAGTCCATGGCAGAGTGCAGCCGCCGTGCCCGAC

Function

NR:

description
PREDICTED: N-acetylglucosamine-1-phosphotransferase subunit gamma-like, partial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K10087 GNPTG, GNPTAG; N-acetylglucosamine-1-phosphate transferase, gamma subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018181 True 3406 mRNA 0.55 13 4020716 4027794

Neighbor

gene id symbol gene type direction distance location
AMCG00018184 baiap3,LOC107550313,LOC107719179,LOC107703313 coding upstream 7648 3980692 ~ 4013068 (+)
AMCG00018180 ube2i,LOC107677193 coding upstream 63977 3949741 ~ 3956739 (+)
AMCG00018178 NA coding upstream 77196 3930521 ~ 3943520 (+)
AMCG00018179 pdpk1,LOC100380750 coding upstream 110528 3900513 ~ 3910188 (+)
AMCG00018175 NA coding upstream 142891 3868385 ~ 3877825 (+)
AMCG00018183 LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642 coding downstream 33017 4060811 ~ 4063955 (+)
AMCG00018182 NA coding downstream 41314 4069108 ~ 4076796 (+)
AMCG00018191 NA coding downstream 111654 4139448 ~ 4154435 (+)
AMCG00018190 NA coding downstream 132597 4160391 ~ 4162600 (+)
AMCG00018189 NA coding downstream 141441 4169235 ~ 4171925 (+)
G114806 NA non-coding upstream 1734 4016078 ~ 4018982 (+)
G114731 NA non-coding upstream 783472 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 851734 3168163 ~ 3168982 (+)
G114674 ubfd1 non-coding upstream 917546 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 1137748 2882432 ~ 2882968 (+)
G114867 NA non-coding downstream 165548 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 166483 4194277 ~ 4198050 (+)
G114888 NA non-coding downstream 270844 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 358386 4386180 ~ 4386889 (+)
G114984 NA non-coding downstream 561501 4589295 ~ 4590074 (+)
G114551 NA other upstream 1372942 2640846 ~ 2647774 (+)
G114518 NA other upstream 1451778 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 1753941 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 2038150 1979046 ~ 1982566 (+)
G114330 NA other upstream 2041989 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 158616 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 567139 4594933 ~ 4604105 (+)
G115049 NA other downstream 733724 4761518 ~ 4763905 (+)
G115299 NA other downstream 1921669 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 2127694 6155488 ~ 6160616 (+)

Expression


Co-expression Network