AMCG00018182


Basic Information

Item Value
gene id AMCG00018182
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4069108 ~ 4076796 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018182
TGCGCCTCTGGCCGGCGGTAACTATCATCACACCGGCAGTTGCGAGAGAGGAGCTACAGAAGAAAACACTCGAGCCAAGATGTGCGGTTTCGCGGCGTGTCTGTCGGCGGAGACCTGGACTCTGCTGGCGGTTGTGTGTGCGCTTGTCCTGGCGTATGGCATCTGGCCTCATGGCTTCTTTAACAAGTTTGGCATCCCTGGGCCCAGACCCCTGCCCTTTCTTGGATCATTTTTTGAATATAGGAAGGGTTTACATAAGTTTGACCTGGAGTGCTTccaaaaatatggaaaaatctGGGGGATTTTTGAGGGCAGGAAACCATTATTGTTCACCATGGACACTTCAATGATCAAGAGCATTATGGTGAAGGAGTGCTATTCCCTTTTCACAAACCGCAGGGATATGAAGCTGATGGGCCCTATGTATGATTCCCTGACCATAGTCAAGGATGAGAAATGGAAACGGATCCGAAGCGTGATCTCTCCCTCCTTCACCAGTGGACGACTGAAAGATGTATTTCcaattgtaaaacaatatgCTGATACTTTGGTAacaaatttacaaaacaaagaccagactgtacaaataaaagaTTTCATTGGTCCATACAGTATGGATGTTGTTACCAGCACTTCCTTCAGTGTCAACGTGGACTCTCTCAACAACCCCAATGACCCCTTTCTGATCAACATCAAGAAAATGCTGAAATTTAGCCTCTTTAACCCTTTGATATTTATCATCACTCTGTTTCCATTCACCGTTCCACTGATGGAAAAGATGAACTTCACCCTTTTTCCTGAAGTGATGTCTACCTTCTTCTATGAGTCCCTTCAGAAGATAAAGTCAGAACGGCAGAAAACCAGTCATAGGAGTCGAGTGGATTTTCTGCAGCTGATGATTGATTCTCAAATAACTGATGAAAAAGCAGAGGAGGAATCAGCCAAAGGTCTGACAGACCATGAGATCCTCTCTCAGTCcatgattttcatttttgctgGCTATGAGACGACCAGCACCTCCCTTTCGTTCCTTGCATATAATCTGGCAACCAATCCAGACTGTATGAAGAAACTGCAGGCGGAGATTGATGAAACCTTTCCAGACAAGGCCTGTGTGACATATGAGGCACTGATGCAGATGGAGTACCTGGACATGGTCATCAGCGAGTCTCTCCGTCTCTACCCCGCTGCCCCGCGCCTGGAGAGAGCCTGCAAGCAGACTGTGGAGATCAACGGGGTGACGATCCCCAAGGGAGTCCTTGTCATCATCCCCGTCTACGCTCTGCATCGCGACCCACAGCACTGGTCAGACCCTGAGCTTTTCAACCCTGAAAGGTTTAGCAAAGCTAACAAGGAAAGTATGGATCCCTATGCGTACATGCCATTTGGAGTTGGACCTCGCAATTGTGTTGGCATGAGGTTTGCCCTCATGGTCATGAAAATGGGAATTGTGCAGCTGCTTCAGAGCTACAGCTTGGAGACCTGCAAGGAGACTCAGatcCCTCTTGAAGTAAACATGCTATTTCAGCCAAAACCCATCACACTGAGACTCGCCCCAAGAACTCCCACAAAAAGTCCCTAATAATTGGAAGACTGAAGTTTAATTGTTAAGAAAATCATAGCTGCATGTGTATCTTCTGTTAGTTTTTCTGATTAAATCAACCATTTTAGGAAGCATTCATCAGTTGGCTGCAGTTgattttattagttattttgaTCTGTAGTATAACAGAAGTGTAATTGAACTCTTCTTACCTTTCTGTTGtcacaacaaaattaattaaacaaattgttaTGTACACTTTGCCTACATAATTAAAGGTAGccttatgtttaattaaaggtGGCGTTATGCTTGGGGAGTCATCTACACTGATAGATTAGTCTGGggatatgttttataaattgtaGAAGCAGCTTGCCTTTACACCACATTGGGCATGggccaaattaaaacattaatctaCTTGTCAATTAGAAATTACAATTCTACATAAACAGAACTTTAGTTGtatctttcctttttctccctttcttctgGGGTTTGTTTCACTGTACtcataaacattattttgtacttACATAATGTATACTAAAAGGCTGTGAAAGTAACTCAAAGTTCAACAGAACCTGAATAAAGGAAGaatacacaatcacacaatatccttctgaaacactgaaacaggTCCAGGTGAATGACAAGTTTAGTCCTGCAAAATGTCATAGACATATAGAAACACGGAGCATGTCCTCCCTTTACCTTAAAAACCACTGAAATTATTCTATGGatactttgaaatattttgccTATATAATAAactttatatattacattta

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0070330 aromatase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17689 CYP3A4; cytochrome P450 family 3 subfamily A4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018182 True 2337 mRNA 0.42 13 4069108 4076796

Neighbor

gene id symbol gene type direction distance location
AMCG00018183 LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642 coding upstream 5153 4060811 ~ 4063955 (+)
AMCG00018181 LOC106940169,LOC103155118,LOC106907654,LOC103462289 coding upstream 41314 4020716 ~ 4027794 (+)
AMCG00018184 baiap3,LOC107550313,LOC107719179,LOC107703313 coding upstream 56040 3980692 ~ 4013068 (+)
AMCG00018180 ube2i,LOC107677193 coding upstream 112369 3949741 ~ 3956739 (+)
AMCG00018178 NA coding upstream 125588 3930521 ~ 3943520 (+)
AMCG00018191 NA coding downstream 62652 4139448 ~ 4154435 (+)
AMCG00018190 NA coding downstream 83595 4160391 ~ 4162600 (+)
AMCG00018189 NA coding downstream 92439 4169235 ~ 4171925 (+)
AMCG00018197 NA coding downstream 132337 4209133 ~ 4211747 (+)
AMCG00018203 LOC106579217,LOC108264572,LOC106578255 coding downstream 218812 4295608 ~ 4296231 (+)
G114806 NA non-coding upstream 50126 4016078 ~ 4018982 (+)
G114731 NA non-coding upstream 831864 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 900126 3168163 ~ 3168982 (+)
G114674 ubfd1 non-coding upstream 965938 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 1186140 2882432 ~ 2882968 (+)
G114867 NA non-coding downstream 116546 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 117481 4194277 ~ 4198050 (+)
G114888 NA non-coding downstream 221842 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 309384 4386180 ~ 4386889 (+)
G114984 NA non-coding downstream 512499 4589295 ~ 4590074 (+)
G114551 NA other upstream 1421334 2640846 ~ 2647774 (+)
G114518 NA other upstream 1500170 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 1802333 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 2086542 1979046 ~ 1982566 (+)
G114330 NA other upstream 2090381 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 109614 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 518137 4594933 ~ 4604105 (+)
G115049 NA other downstream 684722 4761518 ~ 4763905 (+)
G115299 NA other downstream 1872667 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 2078692 6155488 ~ 6160616 (+)

Expression


Co-expression Network