AMCG00018183 (LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642)
Chromosome Information
Item |
Value |
chromosome id |
CM030135.1 |
NCBI id |
CM030135.1
|
chromosome length |
28454832 |
location |
4060811 ~ 4063955 (+) |
genome version |
AmiCal1_2021_bowfin_Genome |
Sequence
>AMCG00018183
CTTTCATTCAACATTATGATATCCGTCTCTCCGCCAATGCGAAAGCAAAAGCAACGGCAGTGGGCGTCACAGGTGCAGTGACGTCACAAGCGCTATAAAGAGTAGCCCGGCCTCCTCAGCTGCTACACAGTCTAGTGTTGCAGTCGGCAGCGGAGGAGCGCGGAGTTGTTTCTTTTGCGGAACGTTCGATTTCTAGAAAGCCTTGAGTCGCAATGGCACGTACCAAGCAGACTGCCCGTAAATCCACCGGTGGAAAGGCCCCCAGGAAGCAGCTGGCCACCAAAGCTGCCCGGAAAAGCGCGCCCTCTACTGGTGGTGTGAAGAAACCTCACAGATACAGGCCCGGAACTGTCGCTCTGAGAGAGATCCGTCGGTACCAGAAGTCCACTGAGTTGCTGATCCGCAAGCTTCCCTTCCAGCGCCTGGTGAGAGAGATTGCGCAGGACTTCAAGACTGACCTCAGGTTCCAGAGTGCAGCCATTGGGGCTCTTCAGGTAAATTAGACTTTGATTGCATGTTGCCTCCTCAGTAGATGCAATAGACAATAATGCAGCATGGGGTCAGGAGGAATGATTTGACTAGTTACATTATTCTAATTCCATCTGGTCTCTTTAATTGAAGTCCCAAAGCCCCCTAATACAGAGTAGTAGTTTCACACTGATAAATGTGACAACCGGAGCATCTAAATAGTTTGGATTTCATAGTGACTTGTGGGTGCCATCTTTGCAAAGTGGGGGAATTCTTCCTATATGACATCCATTGGCAAAGGCCAGTCCAGCATGTCCTAGATTTCCATGTGAACTTGTTTTCTAGCTTTTCAATACTAGGTGTAAGCTTTTATAAAGTAATGCACTGACCGTGAGAACATGTGGACCAAGATTCACATTTGATACCCATTTACATGAGAACTTATCACCTCTTTGACATAAACTGCAGACTTGGAATGCACTGCTCACAGTATTTACAAAGGTGACCtggtgtgtgtacatgtatataacTTGCTTATTTTTAACTTACAGGAGGCCAGCGAGGCTTACTTGGTCGGTCTGTTTGAGGACACCAATCTGTGCGCCATCCATGCAAAGAGAGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGGCGAATCCGGGGCGAGCGTGCTTAAGCAGCAGCTTTCGAACTTTTATCATCTTTTTGGGGAAAAATCCATTTTTGAAATCTTTTATTGAACTGCAAATGCCTTCATGTGGAGGttcaagtttattttgtatttttgttagtaTTGATAGaaaactaaaaggaaaaaaaaaaaat
Function
NR:
description |
PREDICTED: histone H3.3-like |
GO: NA
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
AMCG00018183 |
True |
1297 |
mRNA |
0.46 |
3 |
4060811 |
4063955 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
AMCG00018181 |
LOC106940169,LOC103155118,LOC106907654,LOC103462289
|
coding |
upstream |
33017 |
4020716 ~ 4027794 (+) |
AMCG00018184 |
baiap3,LOC107550313,LOC107719179,LOC107703313
|
coding |
upstream |
47743 |
3980692 ~ 4013068 (+) |
AMCG00018180 |
ube2i,LOC107677193
|
coding |
upstream |
104072 |
3949741 ~ 3956739 (+) |
AMCG00018178 |
NA
|
coding |
upstream |
117291 |
3930521 ~ 3943520 (+) |
AMCG00018179 |
pdpk1,LOC100380750
|
coding |
upstream |
150623 |
3900513 ~ 3910188 (+) |
AMCG00018182 |
NA
|
coding |
downstream |
5153 |
4069108 ~ 4076796 (+) |
AMCG00018191 |
NA
|
coding |
downstream |
75493 |
4139448 ~ 4154435 (+) |
AMCG00018190 |
NA
|
coding |
downstream |
96436 |
4160391 ~ 4162600 (+) |
AMCG00018189 |
NA
|
coding |
downstream |
105280 |
4169235 ~ 4171925 (+) |
AMCG00018197 |
NA
|
coding |
downstream |
145178 |
4209133 ~ 4211747 (+) |
G114806 |
NA
|
non-coding |
upstream |
41829 |
4016078 ~ 4018982 (+) |
G114731 |
NA
|
non-coding |
upstream |
823567 |
3237043 ~ 3237244 (+) |
G114699 |
NA
|
non-coding |
upstream |
891829 |
3168163 ~ 3168982 (+) |
G114674 |
ubfd1
|
non-coding |
upstream |
957641 |
3102166 ~ 3103170 (+) |
G114629 |
NA
|
non-coding |
upstream |
1177843 |
2882432 ~ 2882968 (+) |
G114867 |
NA
|
non-coding |
downstream |
129387 |
4193342 ~ 4193996 (+) |
G114868 |
NA
|
non-coding |
downstream |
130322 |
4194277 ~ 4198050 (+) |
G114888 |
NA
|
non-coding |
downstream |
234683 |
4298638 ~ 4301678 (+) |
G114940 |
NA
|
non-coding |
downstream |
322225 |
4386180 ~ 4386889 (+) |
G114984 |
NA
|
non-coding |
downstream |
525340 |
4589295 ~ 4590074 (+) |
G114551 |
NA
|
other |
upstream |
1413037 |
2640846 ~ 2647774 (+) |
G114518 |
NA
|
other |
upstream |
1491873 |
2491313 ~ 2568938 (+) |
AMCG00018119 |
tfap4,LOC107661646,LOC107718566,LOC107553667
|
other |
upstream |
1794036 |
2247853 ~ 2266775 (+) |
AMCG00018106 |
NA
|
other |
upstream |
2078245 |
1979046 ~ 1982566 (+) |
G114330 |
NA
|
other |
upstream |
2082084 |
1977004 ~ 1978727 (+) |
AMCG00018196 |
NA
|
other |
downstream |
122455 |
4186410 ~ 4193330 (+) |
AMCG00018216 |
telo2
|
other |
downstream |
530978 |
4594933 ~ 4604105 (+) |
G115049 |
NA
|
other |
downstream |
697563 |
4761518 ~ 4763905 (+) |
G115299 |
NA
|
other |
downstream |
1885508 |
5949463 ~ 5951017 (+) |
AMCG00018272 |
NA
|
other |
downstream |
2091533 |
6155488 ~ 6160616 (+) |
Expression