AMCG00018185



Basic Information


Item Value
gene id AMCG00018185
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4065860 ~ 4067317 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00018185
GCGGACCACAGAGGCAGCTGCACCAGACATGTTGTGTTACCTGCAGCGACACACGCTTTGTGTTTTAAGACAAAACTGTCTGTACCGTGGGGTTTTGCTCCAGGGAAATGCGTGTCTAAGGAGGTGTGACGCCCCTCAAAAGCTGTGCTCGAAGGCGGGCAGAGGCGGTCCATCGCAGGCGGCTGGCGACGATGACAAGGGCAAGCCCATCCCGTTTTCCACCAGCAAAGCCAGCCACAAGACGTGGACCGTGGACCGCTCCTTCGGGAGTGAATACCAGCGACCCTGGTGGAAGGTCCTGCCCATCAGCGCCATATGCATAACCTTCTTGCTTTGGTGCATTTTTAGGAAAGAAAGCGACATCGATGCCCAGCTGGATAGAAAACTGTACGAACACTTGCCTGCACTGTTGCCAGAATCTGAAAGGAATGAGCCCGACGTCCATCCCAAAGAAGATTCTTGACTTTCAATGGACTGActttatatttctgttattttttcctttcagccCTCCATCGGTGTGGATCATTGCACATTCTTCTGACTATTGAAGTGAATTGATCCCGTATCAGACGCAACTCTTAACAATGTTGTGATGTGCTTGAAAGGCCCAGCTGCTCCTAATTCATGAGCTGTCCTCCAGTTTAAtggaggacagacacacacaactgttTCAAAAAACAGCTATatgatttcttaattaaactgaatgaaatatgttaaaaagagcagtaaaaaaaaacattagtggTGTTAATATGAAATCCTAACTCAGTTGCCCATAGAGTCTAGATctagtaatttaaataaatggagaTTGTAATTCTCTGAAAATGGTTACAGGTGCTATTCTACTCTTTGtgacaataaataattcaacatgATCATGACATTGTAACATTTCCAGCATTCGCACTCGGTAATGTATCGGACAGCATGCCTTTTTGTGACCGGAGTATTGTCACCGTGTGTTTTCTCAGCctg

Function


GO:

id name namespace
GO:0044429 obsolete mitochondrial part cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00018185 True 984 mRNA 0.45 2 4065860 4067317
Loading

Neighbor


gene id symbol gene type direction distance location
AMCG00018186 NA coding downstream 8387 4033690 ~ 4057473 (-)
AMCG00018188 NA coding downstream 38935 4025743 ~ 4026925 (-)
AMCG00018187 tsr3 coding downstream 47036 4013931 ~ 4018824 (-)
AMCG00018177 cog7 coding downstream 239296 3815535 ~ 3826564 (-)
AMCG00018176 NA coding downstream 256340 3778175 ~ 3809520 (-)
AMCG00018193 gper1,LOC106601100,LOC106607359,LOC107703333,LOC107579847,LOC107719188 coding upstream 27670 4094987 ~ 4096066 (-)
AMCG00018194 NA coding upstream 44356 4111673 ~ 4112830 (-)
AMCG00018192 gpr146,LOC107703371,LOC107550312,LOC107710650,LOC107674685,LOC107565765 coding upstream 56980 4124297 ~ 4125298 (-)
AMCG00018195 NA coding upstream 104788 4172105 ~ 4185911 (-)
AMCG00018202 NA coding upstream 125161 4192478 ~ 4196034 (-)
G114785 NA non-coding downstream 155461 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 663922 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 924550 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 988100 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 1067602 2996035 ~ 2998258 (-)
G114915 NA non-coding upstream 227994 4295311 ~ 4352363 (-)
G114941 NA non-coding upstream 318616 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 521978 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 612223 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 753648 4820965 ~ 4821411 (-)
AMCG00018142 NA other downstream 1418049 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 1456381 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 1776998 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 1998276 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 2059224 1985149 ~ 2006636 (-)
G115020 NA other upstream 518745 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 578830 4646147 ~ 4651641 (-)
G115174 NA other upstream 1219069 5286386 ~ 5287873 (-)
G115183 NA other upstream 1232790 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 1289529 5356846 ~ 5366754 (-)

Expression


AMCG00018185 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
End of interactive chart.

AMCG00018185 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00018185 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network