AMCG00018186



Basic Information


Item Value
gene id AMCG00018186
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4033690 ~ 4057473 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00018186
GCGGCGAGGGCCTTCGCGCAGGCGCCTTTCATTGTTTTGACTGAAAATGCCGTCGGTTTCGAAAACGGCGGCGAGCGCTTCTCCTCAAACCGAGAAACCAACCCACTACACCTATTTAAAGGAGTTTAGGACCGAGCAATGCCCCCTCTTCTTGCAGCACAAGTGTACCCAGCACAGACcttttacatgttttcactgGCATTTCCTAAACCAGCGGAGACGAAGACCTATCAGGAGACGAGATGGGACTTTTAACTACAGCCCCGACGTTTATTGTACAAAATACGATGAAACGACAGGCATCTGCCCGGATGGAGACGATAGCTtctccatcatcatcatcatcatcatcaaggCCATTCTGTGGAACCATTTCCTACAGTCTGGGCAGGGCCTTGTCCAGTTAGTCAGCCTGGTAGTGAAGCTGAGCACTGTCTGTAGGAGACCTTGTGGGACTAAGCTGCTGCCTGTCATTGAGGGACTGTCTTTTGAATCGATTTGCAGAGAAATCCAAGCGCAGGAGGCCCTGCAGAATGGACAGCTGGGCGCTGGGGAGGGGATCCCCGACCTGCAGCCCGGAGTGCTGGCCAGCCAGGCGATGATCGAGAAGACGCTCACAGAGGACCCCAGGTGGCAGGATACCAACTTTGTTCTCGCCAACTACAAGACGGAACAGTGCACCAAACCTCCACGCCTCTGCAGACAAGGATATGCCTGCCCACACTATCACAACAGTCGAGACCGGAGAAGAAACCCCAGGAAGTTTAAATACAGGTCCACCCCCTGTCCGAATGTAAAGCATGGCGATGAATGGGGCGAACCTTCGAAGTGTGACAGCGGAGACAGCTGCCAGTATTGCCACTCGCGCACGGAGCAGCAGTTCCATCCGGAGatTTACAAATCCACAAAATGCAATGACATGCGTCAAACGGGCTACTGTCCACGGGGGCCGTTCTGTGCGTTTGCACACGTGGAAAGAATATCTTCCTCCGATGAGCCCATGAGTTCGTTGCTTACTGTGATGCATTCTGGGTCCCAGTCCAAGCCGGGCTCCCAGCAGTATTCTGAGTGTCCGGTCAGTGAGTGGTGTGGCAACGCAAACTCTATAGGCAGTACTGCCAACAACAATGGTCAAATGGTGAATGTTTCATGCACTAGTAGTCCGACTGTAACGTCAGGCTCAGGAAGCAACAGTTCTTTGTCCCCAGTTGGACCCATCAGCAGGCCCAAATGCTTTACTAATGGTAGCTTATGTTCAGAGTCCACCACGTCCAATGTTTCGTCTCCGACGTCTAACTATCCCAAAGCACCGGGGTTTGAACGTGAGGATCAGGCCAAAAACATGAAGGTTCATCCAATGGATGGTAGTCAAAAGTTAATGGACCACGAAAAACAGAATCTTATTAGTGTTTTTTCAGTGGTAAACCCACTGGCGTCGAGTATAACATCCAGTATAACTTCAAGCCTAGCCTCCAGTATTGGCTCGGACAGCTCGTCCCCGACTACTCTGTCAACGATGAATGCAAAAGCTACCCCCTTCTACCCTGGTAGCAATACTGTTGAATCGGTGATAGGTTCTGCTCTGGATCTAAATTTCAGTGACATCAACGTCTCTCTAGACAAAGAATTAGAAGACCAAGAGAACAGCGACCTTGGTTTGACAAATCAGAGATTGTTAGGCGGCTCGGCTCCCGTCAATATTCCTGGCTCCCTGGCCCGCTCTTCCTCGCTgcactcctcctcctcgctcTCTGCCTCCCCGCTGAGCTCGCTCTCTCAGTCCCTGTCCCAGTCGCTCCTCTCCGCAGGAATGGCCCCCCAGCAGAGTCAGCCCCAGGCCCACCCAACCAAAGCAGAGCACGGCCTCCTGGGAACTTCCGCCTCCTCCCAGAACTCCCTCGGTTTAAACGGGGGTGCTGGCAGCATATGGGACTTTGTGAGCGGCAGTTTCTCACCCAGCCCGTCGCCCGTGTTCAGCAACGTCACCTCGACCACTGTGAGTTCCAGCAGCGCTGACCTCGTCAGGTTACGGAGGGACCTGGACGAAGCCAAGCGGAAAATCAAGCAGTGGGAAGACTCGTGGCAGCAGGTAAAACAGGCTTGTGACGCCTGGCAGAAGGAGGCGCAGGAGGCGAAGGAGCAGGCCCAGTCCGCGGAGGCCGAGCGGCTGCTGGCGGCGCAGAAGCGGGACGAGGCGGACCGGCGGCTCAAGCAGCTGCAGGACGACTTCGACTCTGTGTGCCGCTCGCCCAACGTGCCGCTCTTGCGCAGCTACGGCGATCTGGACCAGATGCCCCTGCCCAAGCTGCACGCCCTCCAGAGCCAGCTGCGGGCCGACTTGGACCTCATAGACGGGGTAATATATCAGCTTCAGTCAAAGAAATGTATAGTTTGCCAAAAGCATGACCGGTGCATCGTCCTGCAGCCATGCCAGCATTATGTACTCTGTGAGAACTGCGCGCCTAGCAAATCCGAATGTCCCTACTGTCAGACGAAGATACTGAAGTGGTGATGTAGAGATATTCAAGGTACCCGTTCTGGATCTAGCTCTTTGAAgaactactactaatatattATGTTAACAGTTTAAGTACAGCATTTTGTGTTCTCAGTATTTCATATAGTAATTGAATTGATAGTTTTATTAGAAATTATTAATGGTGTTTGACTGATACATCTGTGGATCTCAAATCATCCAGGGGGTCTGTCAGGATTCGTGAGCATTGTGATATTTCAGAAGCTCCCCCTCAGCTCATTTTGATTACTTAGGTCTATATAATTCCCATTCCAATACCGCATGTGATAATTGATAACACATTTGATTAAAGGTGTCAGTCAAACACTGTTAGCGCTACTAGTTATGTGAAGAAGATTGATTTCTTGTAAAAGCACTTTGTTGACCTGGGGATTTGTTAAAAAGTTACTTTAGAAAATTGCTTCAAGCTGCTTTGtagaattatttttgtttgtttttagttttatttcattttctctaaATATGCTATTATATGAAGCTTTTGTTTGTGTACTGTGAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00018186 True 3035 mRNA 0.51 17 4033690 4057473
Loading

Neighbor


gene id symbol gene type direction distance location
AMCG00018188 NA coding downstream 6765 4025743 ~ 4026925 (-)
AMCG00018187 tsr3 coding downstream 14866 4013931 ~ 4018824 (-)
AMCG00018177 cog7 coding downstream 207126 3815535 ~ 3826564 (-)
AMCG00018176 NA coding downstream 224170 3778175 ~ 3809520 (-)
AMCG00018171 NA coding downstream 549787 3481708 ~ 3483903 (-)
AMCG00018185 NA coding upstream 8387 4065860 ~ 4067317 (-)
AMCG00018193 gper1,LOC106601100,LOC106607359,LOC107703333,LOC107579847,LOC107719188 coding upstream 37514 4094987 ~ 4096066 (-)
AMCG00018194 NA coding upstream 54200 4111673 ~ 4112830 (-)
AMCG00018192 gpr146,LOC107703371,LOC107550312,LOC107710650,LOC107674685,LOC107565765 coding upstream 66824 4124297 ~ 4125298 (-)
AMCG00018195 NA coding upstream 114632 4172105 ~ 4185911 (-)
G114785 NA non-coding downstream 123291 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 631752 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 892380 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 955930 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 1035432 2996035 ~ 2998258 (-)
G114915 NA non-coding upstream 237838 4295311 ~ 4352363 (-)
G114941 NA non-coding upstream 328460 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 531822 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 622067 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 763492 4820965 ~ 4821411 (-)
AMCG00018142 NA other downstream 1385879 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 1424211 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 1744828 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 1966106 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 2027054 1985149 ~ 2006636 (-)
G115020 NA other upstream 528589 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 588674 4646147 ~ 4651641 (-)
G115174 NA other upstream 1228913 5286386 ~ 5287873 (-)
G115183 NA other upstream 1242634 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 1299373 5356846 ~ 5366754 (-)

Expression


AMCG00018186 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

AMCG00018186 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00018186 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_01047300_01066367 UNKL, UNKL.S coding CI01000046 null 1047209 ~ 1066367 (-)