AMCG00018205


Basic Information

Item Value
gene id AMCG00018205
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4370469 ~ 4380047 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018205
GCCCGCAGCGCCGGGGAGCAGTATTCTCTTGGAGAGACGAGTTTCCGGGAAGTCCACATAAGACAATCCTCTCACTCAAATATTGAAAGGATTTAGAACTTCCAAACAACTCGAAGTTCTGGGTCACTTGATCTGGATTGTTACCACCCACACCGATCAGTTTCATTTGTATCTCTCAAGAAGATGTTAGAAAATCAACTTTGGGTTTAGGACCATTATATTGGGAGCAGCTGCCCATCTTTAGTTGGTTAAAGTCCTGTGGTTGGCCCGTTTCAACCCAACCATCTGATTGCCACTTCTGAGCCCACAGGACCCACAGACTATTAGTTTCAGCCTCCAGAGAAGTCCAGTCCCAACCTCCAGGAGCAGAAAAAACGGAACCATGAGGGGGCTTCACCCTACATCTGAAGTGCTGCGGTTGTGCGTGACGCTCCTGGTTCTGGTCCGGGTGCCGGCCGCCATCGCTGAGAGCTGTCTCCTGATCAGCGAGATAAACCCGGACAACCCACAACACGACTTGATGGAGTTTGTGGAGCTCTTCCACAGCAGTGGCAAGAGTGCGAGTCTGGACGGCTACACCCTGGTCTTCTACAATGGCAATGGGAACACCGCCTACAAAGTTTTGGACCTGAGCAGCTACACCACGGACGACACGGGATTCTTCCTGGCTGGTGCTCACACCATCAGTCCCAAGCCCACCATCATACTGCCGCCCAACAGCGTGCAGAATGGACCCGACGCCATTGCGCTGTACCATGGTGACGGGCAGTACACTGAGGGGATGGACGTGACTGCCGAGGGCCTGGTGGACGCCATCGTGTACAAATCCCGGCGCGTCGCGGACGGGGAGGGCTTGGCCGAGGTCTTGACGCCTGGGTTCCCGGTTTTCCTGGAAGACGAGTCCGTCCTCGAAGGTGACGAGTCCATAGAGCGCTGCTGGCTCTCTGGGCAGAGTTGGACTTTCCAGGTAGCCGTCCCCTCCCCGGGCAGGAGGAACCCGTGCATGAGGCAGGCGGCTCAGACAGCGGAGATCAGTGAGCTcagtcttggaggagaggtcTTCGTGGAGCTCAGCATTCCCCAGCCTTCTACCCCGCTGGCTCTGGTGTTCCTGAACGGGACCACAGCTACAGTGGAGTTCAGCATGGACGTCCAGGCCAATGGGACAGGGCTGCTCCTTATTGTCTCGGCGGGAAGCAGTGTAAAAGATGCTGTGGTCTTGCCCCCTGAAGGCGAGTCTGTGCTGCTACAGCAGGGGGCGCTCTCGGGGGCAGTGGCACTGTACAGCGGGAGAGCTGTGGATTTTCCAGCCGGGGGACCGGTAAGCCTGGAGGAGCCACTTGATGCCTTCGTTTTCTGGGGAGCAGGAGAGTTGAGTGGCAACCTGACTGACGCGCTGACCCCTGGCCGGCAGGGTTTCCACCTGACTAACAGGTCTCTGCAAATGGATGTGTCTCTGAGCCGCTGTGGTGTTTCTGGTTGGAGCGGGGACCCCGGGGCCTTCACTGAGAGCCCCCAAACTCCAGGCCAGGCAAACCAATGCACGGGGTTGCTGCCTTGCCCTTCCATCCCAGTGAGTCCAACCCAGCTTCCGCCGAACCCCTCCCCTACGGACCCGTCCCTGTCGCTGGACTTCCTGCTTAACGAAGTGAACGCGGACACGCCGGGTGCGGCGGAGGACGCAGAGTTCATCGAGATCTGGCACCCTGCCGGCCGGCGGGTCAGCTTGGACGGCATCTGGCTGCTCCTATTCAGCGGCCACAACAACCAGCACTACCGCCAGTTCAGCCTCTATGGCTACTTCACCGACGCTCAGGGCTACTTCATCCTGGGCAGTCACAGGATGACGCCCCAGCCTTCCTTTCCCCTGCCCTCCAACATGGTGCAGAACGGTCCTGATGCTGTGGCCCTGTACCGCAGCCTCCAGGGCCCACCCATGCCTGCGGAGAAAGGGGCCATCCCCACCGACGGCCTCCTGGACGCCATTGTGTACCGCCAGCGCGGCTCAGACAAGCAGACCCGGGGCCTCAGTGACGCGCTGACTCCCTGGCAGATCCCCCTCTTCGAGGACTCCAGTTTCAGCTCCGGGGATGAGTCTCTGAGCCGCTGTGGCAGCCTGAAGCCCCTTGACCTCTCTGCCTTCAGGGTTACCGTTCCAACCCCTTTGAAGAAGAATGCCTGTTCCCTTGCCTCCACCTCAGCCCCCCAGCCCACCTCGGCACCAGCTCCTCAGCACATCTACCTCAGCGAGGTGGCCAGTGCCAGCTGGACTAATCGCAGCCAGCAGGAGTCCTTTATCGAGCTGGCGTCGCCACCCCTGGCTAGCCTGCGGGGGCTGCTCCTGGTGCTGCTGAAGCCCGGCCACAGCGGCCCAATCCTCACCCTCCGTCTGACGGGGACGGCCAGCAAGGAAGGGGTGTATCTCATCGGGAATGTCAGTGGTGCCAACCAGGTCCTGCCTGTCAGCTCTGGGGTGCCACACTGGGGTGCTGTGGCACTTTACCAGGGTGCTTACGGAGTGGCAGTGACCAACCACATCCTGGTAGATGCCTTGGTGTTCAGTGAGGACCAGGAGCTTCTGAGAACCCTCGCTCTCAGCAGGGGGCAGCATGTTACCCCAGAGCCCAGGTCTGTTGAGGGACCAGTGTCTCTGAGTTGCTGTCCCTGCAATGACACACAATGTCCTCCCATGTGGACCACCTCAGAACAGACCCCCGGTCACCTCAACCTCTGTCCCTCCTCCAACTTCTCCAGTGAGGCGGACATGTGTTTGAGACCCCTGACTGGCACAGGGAAACCCGTCTCAGACTGTGAGAGCTGGAAGCAGCAGAGAGGCAGCAGGGAGGCGGTTCAGCGTGAGGTGGCCGTGATCATGGAGCAGTCCTGCCGCTGCGGCGTTTCTGAACTGCACCTGCAGGATGCCAAGTTCTCCTGTGATGGGGAATGGCTGCAAGTGGGGGGGACCCTGCTGGCCCTGTCCGCACAGCAGATGGACCTCATCTTGCAGAGCAGTGGAGCGCACCATTGCTCCCCGTCCATTACGGAGCAGACCAAGGCAGGAACGGTGGGGCTAGGCTGGGAGATTGGACTGATCATCTTCACGCTCGTTGCCCTGGGGCTGGGGGCGGCCCTGGCGACTTACTTGTACAGAAAAAGGCGTCCATTGAACTATTCAACCATTGAGCTGAATGAGCAAGGTGATGAAGCAGGGCAGGATCTTTAGCCCCATGCCTGGGCCTGTCGCGCTTCCCCTGCCACCCCAGGAGGGAGACGGACCCTCCGTGTTCAGCACTGTTCTCTCCCAACAATGCGTTCCCCTGCCCAGATAAGACACAGTTTAGGGGGCACAGTAACACACTGAGTGTCCTTATATAaacctgtttgtgtttgtcaccTCGAGTTGTATTAGTGTCAACTACTTATGTCGTTGTGGATGTGTTGTACAGTTTTGTGTATCAGTTTACGTTTGAGATGTTGtgatgtgtctttgtttttttaagaaattctATGTGGTGGTTGGTGCCGGCATGTGTTCTAAGGAAAGAACTAACTAGATGAGCAAATCTGGTTGAAAAGTCCTAGTTTGCTGTAACACAGGCTGACTGTGTTTTTaactaattttacattttggaagtCCGGGTTCACGTGTTTTAAGAGATGTTTTAGTTGGTTTTTTTATGAAAGGGGGAAATTAACAATTGAATGAAGTTGaggcattttgtaatttaatgtgCATTATGTATACGTTTGTCACATATACAGGACTGTAGTGTTGAATAAATGAACACAGATTAGACTGTGTTGGGAAGCATTGTAAGCTTCTACTATAGCACTGCGTGTGGGATGTTTTGCGTGTGTTGTCAGGGCACCCTTGAATGTAAATCCCAGTGGAAGTTCACGTATTGTGAATAGAGAGATCATCCTCAAAGTGTTCACACTAACCATACAGGTCAAAAGTGTAGACGGCGATTCCAGTGACTTCCACTTTTCACACAACCAAATGTACATTGTTGATTTGcactttcaattaattaaatgcattgagATACTTCCACCAGCTTTGGTTCAGTATGTTTACACAGGTGTgtagtttgtattgtttaaataactCCCCTCTGAGTTTGGTGGGACTTAAATTTCACGTGATTCATTGGCTAAGAAGGTGTGTGTAGGAACTGCAGGAACAACTGAGCCAAAGAGCCACCATTCACATTGACTTGGCCAAGATTACGTACGTCTGAAACAGGTCTGTGCTTATATTCTGTGCACCTTTGTTAAAGGATACTcttcaattgttatttttttacactaaaaatggcaaataaatgttttatatataaaatgtttttttagtttttttgttctgtgctGTGCACATAATTTCTGTTGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018205 True 4393 mRNA 0.54 12 4370469 4380047

Neighbor

gene id symbol gene type direction distance location
AMCG00018208 NA coding downstream 10579 4350006 ~ 4359890 (-)
AMCG00018209 NA coding downstream 28984 4333059 ~ 4341485 (-)
AMCG00018207 LOC107677127 coding downstream 39294 4315262 ~ 4331175 (-)
AMCG00018206 rhot2 coding downstream 57102 4300555 ~ 4313367 (-)
AMCG00018199 rhbdl1,LOC102790881,LOC107677126 coding downstream 109719 4242278 ~ 4260750 (-)
AMCG00018210 sbk1,LOC107388055 coding upstream 77790 4457837 ~ 4460720 (-)
AMCG00018223 NA coding upstream 225104 4605151 ~ 4610325 (-)
AMCG00018221 NA coding upstream 242223 4622270 ~ 4628633 (-)
AMCG00018219 NA coding upstream 259657 4639704 ~ 4640258 (-)
AMCG00018222 metrn coding upstream 286138 4666185 ~ 4672356 (-)
G114915 NA non-coding downstream 18106 4295311 ~ 4352363 (-)
G114785 NA non-coding downstream 460070 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 968531 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 1229159 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 1292709 3077041 ~ 3077760 (-)
G114941 NA non-coding upstream 5886 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 209248 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 299493 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 440918 4820965 ~ 4821411 (-)
G115100 NA non-coding upstream 656684 5036731 ~ 5058586 (-)
G114838 NA other downstream 283438 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 1722658 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 1760990 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 2081607 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 2302885 2006906 ~ 2067584 (-)
G115020 NA other upstream 206015 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 266100 4646147 ~ 4651641 (-)
G115174 NA other upstream 906339 5286386 ~ 5287873 (-)
G115183 NA other upstream 920060 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 976799 5356846 ~ 5366754 (-)

Expression


Co-expression Network