AMCG00018207 (LOC107677127)


Basic Information

Item Value
gene id AMCG00018207
gene name LOC107677127
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4315262 ~ 4331175 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018207
ATGACCAGCAGCAAAGTGTGGCAGCACCCCTACGTCAACATGTTCAAGCACGTCCGGATGGAGGAGTGGAAGAAGTCCACCAAAGAGGGCGATGTGACCACCTACATGGACAAAACCTTGAAGTGCTCCGTGTATCGCATCCGGGGATCCATTCCGGCCAGCAACTACATCCTTCTCCCTAAAACAAGCACCCAGTCGCTCGGGCTGACCGGCCGCTACCTGTACCTGCTGTTCAGACCCAGCCCCGGCAAGCACTTCGTGGTCCATCTGGATGTAGCCTCCGAGGAAGGCCAGGTCATCCGCATCTCGTTTTCCAACCTGTTTAAGGAGTTCAAATCCACGGCCACTTGGCTGCAGTTCCCCTTCCTGTGTGGAGCTGCCAAGGGCTCCGTGTACGAGACCACGGCCCACAGCGCTCGCCACGGTTTGACCTTCAGCGAAGCCAAAGCCGGAACAGGTCCCTTGCCAGGTGCGAGCGCGATGCCACGAGAGATGAGCTTCCCAGTGCCCAAAGGAGGAAGCTGGCACGATCTGTACGACTTCATTAGGTTTCCCTCAGATGGAGCCAAGATGCCGTTCGACTCCATTCAGAAGGGCCTGGCTCATCCTGGTACTGCTGCTCCAAAACCTGCAAGTCCAGTTCGAGAAGAGGCCCGCAGTGTGAGCATCAGCAAACCAGTGCAGGACAGAGTCTCCCTCATTCAGCAGATCACCACCCCGAAAACACGCCCTCGACACCGTACCCCGCTGTTGACCAGCAGTGTCCCTGAGCTGGGCCTGGTGTCCTCCGCGCCCATGAGCAGGGAGCTGGCGGAGAGCTGGCCCGGGGGCGGGTCGGACAGGGGGCCGGGCGTGGAGAGCGGGGGGCCGGAGGGGGACAGTCTGACGCTCCTCACGGCCGACGACGGGGGCGTCCACATCTTCGCACATCGGGACGATGACATCACCGTCCACAGGCACGACAGCGACACCGAAGAGACGGTGTGCACTAAAGTCCAAGGCCCGGTTTCTCTACCATCAAAGAAAGTAGCTGAGCACTCGaaaCTGCAGCCCGATCCCATACTGAGACTCAAAAAGATTATTGGCTTTGGAGGATGCACCACTAAATGTGCTCTGTGGTCGCAGACGGGTGAGGCTGTGGTGTACGCCTGCCATGCTGTGATTGTCTCCATGAAAATCGCCTCTGAAGAGCAAAGGTTTTTCATCGGTCACACAGATAAGGTCTCCGCCCTCGCGTTCAACGGCAACTGCACCCTCCTGGCCTCGGCCCAGACGGGTGGCCTGAGTGCGGTGCGTGTGTGGAACTACCTGAAGGGAAGCTGCCTGGCCATGACCCACGCGCACTCGGTCTCCTCGCTCAGCTTCTCCTCCAGTGGTGGGGTTCTGTGTGGCGTGGGGAAGGACACCCATGGGAAAAGTATGGTGGTGGTGTGGAACACGCAGCGGGCCAAGAGTGGGGGGGAGGTGGTGCTGCTGGCCAAGGCCCACACGGACGTTGACATACAGACCATGAAGATCGCCTTCTTCGACGACACCAGGATGGTGTCGTGCGGCAGGGATAACATCCGTCTGTGGCGAGTGCGCAGCGGCGTCCTGCGGTCCTGTCCGGTGAACCTGGGCGAGTACCACGCCCTGGAGTACACCGACATCGCCTTCGAGGACGGGCACTTCGCCGACCGGGAGCCCGACGACCGGACGCTGTTTGCCAGCAGCAAGAGTGGCCACATCCTGGAGATTGACTACAAGAGCATGGCGATCAGGAACGTGAGGAGACTGTTGCCATCTCAGCCAAAACACTCACAGCGCAGAGAGAAACAGACCTTCTGCTCAGGACCTGGGATCGCCATCAACAGCATAAGCGTCTCCTCGGCCTTCTGCGCCACCGGCTCTGAGGATGGGTACCTGCGTCTGTGGCCTCTGGACTTCTCCACAGTGTTTCTGGAGGCTGAGCACGAGGGGCCGCTGAGCCTGGTCAGCATCAGCGCGGAGGGGCTGAACGTCCTGGCCTCCACGGCCTCCGGGACCCTGGGCTACCTGGACGTGAGCAGCCGCGGATACAGCACCCTGATGAGGTCGCACACCGACACCGTGCTGGGCTTCAGCGTGGACGGCATCCGCAGGAACATCGCCACGGTGTCCGAGGACCGCAGCATCCGCATCTGGAACCTGGACTCCCTGCAGCAGCTGTATGACTTTGTTTCGGAGGACACCCCCTGCGCGGTGGCCTTCCACCCCAGCCAGCAGGTGTTTTCATGTGGGTTCGGCAGCGGGCTGGTTCGGGTCTTCAGGATCTCCACCTCCAGCCTCCTAGCAGAGCACAAGCAGCACCGGGGCAAAGTGACTGGCCTGGCCTTCTCTCCAGACGGGGAGTACATGTACAGCGCTGGCTCTCTGGGCACCCTGGCGCTGTACAGCTCGGCCGAGGACGACCATCACGTCCTCAGAGTCTTGGGGAACGTGGTGGCCCGGGGCAGCGAGCGCAGGCCAGACGCCCTGGCAGTGAGCAGCGACAGCAGGAGCCTGGCCTTCGTGGGCCCCTCGGAGTACACCGTCACGGTCATGGATGCCCGCTCCCTGGACGAGCTGATGCGGATAGACGTGAGCATCCTGGACCTGGACAGTACGAGTCTGGACTCAGCCGTGAAAGTGTGCTTCCCCCCCGTCTCCACCGGGCACCTGCTGGTCACCACGTCGGCCAACAAGATCCTGTGGCTGAACGCCACCACCGGGCGGCTGCTGCGAGAGGTCCCCAACACGCACAAGAAGGTGTGTTCGTCGCTGTCGGTGAGCGACGACGGCCGGTTCCTGTTGACCGCGGGACACAAGGCCATCAAGCTGTGGGACTACAACATGAAGCACGACGTCAACTGCCAGGTCTTTATCGGTCACTCTCAGCCCATTCAGCAGGTGAGCTTCACTCCAGACCAGCTGGGGGTTGTGACTGTGGGAGACGCCATCTACTACTGGGACTTCCTGGCTTATCCTCAGGAGATACAGGAGCGTAAAACGCTGGCTCACGCTGCCGTCTCCCTCTCGCCTTGTAGAGCAGCTGGGGCCTCAGCGTTGAGTGTCAGTGGGATGCTGATGTCCGGTGGGATGCCCCGTGAGACTGCGCCTGTGCCCTCCTCTTCTCCACCCTGCCTGGACATCAGCTCCATAAACCGGACCGGCCACGAGGGGTCCCTGTTTCTGTGCAACGACGTGGAGGAATCCGACCTGGGTAGTGGGCCCCCACCCCCGGTGAGTGGCTCCGTCTTGCGGGTCACGGAGACGCCGGCCGCGGGCAGACAGAGATCCCCGTTGAGAGGAAGCGACAGGCAGCCTAATGGTGGGAAGCTCTTTGACCTTGGTCTGTTTGCCTACTCATGTGgctgtgtggtggtggtggaggatCTGCACACGGGATCTCAGAAGCACTGGCTCGGACACACGGAGGAGATCTCCACCCTCGCCGCCACACACGACGCCCAGGTGGTGGCTTCGGCCTCCGGGGGCAGCCAACGCTCTGGCAGTGTCATCTGCATCTGGAGCGTGCAGGACGGATCCCGGAGGAACTGCCTCTCGTACCACAGAGGGGAGGTGCAGGCGATGGCCTACTCCAGAGATgacttcttcttcctctctgcaGGAGATTACACGGACCCTGGGATCGCCCTGTGGAGCACCAGGACCTACCAGCTGCTATCCAGCGTCAGCCTCTCGGTGCCGGTCCATGATGTGGCCTTCAACCACTCCTCCGCCAGCCAGCTGGCCTGTGTGGGCAGCAGCAGTGCCCTGTTCATCACCATCGAGAGCAAAGGCCCTGACGTACAGTTACAGgtgtgCAAGACAGCCGTGCCTGAGGAGGTGGGGGCGGCGGAGCTCACCGCGCTGTGCTACAGCTCAGACTCCATCCTCTACACGGCCACCAACAGCGGCAAGGTGTGCGCCTGGGACTGCCACGGCACGCGCTGCTTCATGACCTGGGAGGCAGACGAGGGCGAAATCGGGGTGTTGCTGTGCCGAGGGAACCGGCTCCTCTCGGGCAGCAACACTAAGCGGATCCGGCTGTGGGCGGTGGCGGCGGTGCAGGGGATGAGACCGGGGGCTCGGGGCTCAGGGGAAAGCATTTCCAGGAGCGGTTCGGTGCTTCTCGAGCAGGAGATGGTGCTGGACGGCACCGTGGTCAGCGCCGCCTTTGACGACGTGATGGACATGGGCATTGTGGGCACCACCGCCGGCACCGTCTGGTACATAAACTGGGTGGAGAACACCAGCATCCGGCTCATCAGCGGGCACAAGAACAAAGTAGGTATCGGTCGGGACCTGGTCTTGGTGGAGCTCCGGCTTCTTGAGCTCCGTGCTGGGGCTGAGGAACGAGGTGCTGAGATCGGAGTTGCTGCTCCCTTGTCTGCGCAGGTGAACGATGTGGCCTTCAGCCCCGAGGAGAGCCACTTCGCCACGTGTGCGGAGGACGGCAGCCTGCGGGTCTGGGCCGTTCCCAGCAACGAACTGGTGGTGCAGTTCCAGGTGCTCAATCAGAGCTGCCTGTGTCTCGCCTGGAGCCCAGCCTGTCCCTCCCAGGACGACGGCAGGAGCCAGCGCCTCGCGGCCGGGTACAGCGACGGCACGCTGCGGCTCTTCAGCCTCCTCACCGCAGAGATGGAGCTCAAGCTGCACCCCCACCCGGTGGCCGTCACAGCCATCCGGTACTCCGCGGATGGCCAGGTGCTCATCTCCGGAGGGAAAGATGGCCTGATGGCAGTCAGCAGCCCCCGGACCGGAATGACAATCCGCGTCATCAAATTCGGTCTTCAGGGAAATGAGCTCTGGTTGGCTGCCAGCGCAGACAGGCGTGTCAGCATCTGGGCATCCGATTGGTCGAAGGACAAGTGTGACCTCCTGGATTGGCTCACCTTCCCGGCTCCCCTGTGTACGGAGGAGGCAGACAGCCTGCCGCCCAGCCTCGCTGCCTTCTCCCCCACCGAGCCGGGCGTGGTGCTTTATGTGGGGTACGGCGTGGAGCGCGAGATCACATTCTACAGCCTGGCACACAAACAGATCATCAAGAGGATTGCATTGTCTCACTGGGCGACATGTCTGAGTGTTTCTTCCAAAGGCCATCTCCTCGCAGTTGGTTCAAATGAGCGCCTCCTGACGCTCATCAAGTCCACCAACGGGAAGTTCCAGGACTTCCCGGCGCACAGCGACTCCGTGCACGTGTGTGGCTTCGCCCCGTCCGGGGACCGCCTCTTCACGTCGGCCTACAATGAGATCTTCCTGTGGGACGTGCAGGGCTTGTAGCCGGCGGGACCCCCGGCCCCCCTCGCACCACGGGCGGGAGGCTCGGGTTGAACCGCGTAACCCAAACCTTCCCGCCCCTGCCTCGGCACGAATCGAGACGAAACCTTGAAAGATCTTCACATTGCAAACTCCGAAGCGAGATTTTGTCGCGGACTCAAGAGCCGCGACGCCTCCTCTCCCTGGGGCGATGGCTGCTGGCTCTGGAAGCAAAGCCACGCGAGCAGCTCTGTCCTGCCCGTAGCTGGACCGAGCCACCCTGGTGCGTCTCCTGTGGGAGGCAGGAGAGACAATCCGTACGTCCGTTGTACAGCTACTCTGGTTTTGTTGCaaaatgttgtgtgtttttaaaatcctCCATTTAATTACAGGGGTTAGTTATGGAAGAACCCCAGCCATCTTAGACTTCAACACTCGGGGTTTCTCGTTGTCCTCTCCTAACTGAGAGTGCAGTGCCTGTTGAATCATTACCTGGTTTACATGTCCAGTTAGGAGAGGCATGGAGTCCTGAGGCTTTCACGAAAAACATGCCTGGGTCTATCTTTAGAAGCAGGGTAACTGCATCTAAAAATAGAAACCGGTTTTAAATGATGTGCTGctcgtgtgtttgtttgtcaaagGACAccttgatttgtttaaattaaattccatcAGCAACCAAAGTGTTTACACTGCgccacccccccccaaacacactgCAGTATTCCAGTGCCTTACATTAGAGACAAT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 90-like

GO: NA

KEGG:

id description
K24759 WDR90; WD repeat-containing protein 90

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018207 True 6009 mRNA 0.61 39 4315262 4331175

Neighbor

gene id symbol gene type direction distance location
AMCG00018206 rhot2 coding downstream 1895 4300555 ~ 4313367 (-)
AMCG00018199 rhbdl1,LOC102790881,LOC107677126 coding downstream 54512 4242278 ~ 4260750 (-)
AMCG00018198 rhbdl1 coding downstream 89979 4219821 ~ 4225283 (-)
AMCG00018200 wdr24,LOC106578258 coding downstream 106141 4199902 ~ 4209121 (-)
AMCG00018201 NA coding downstream 117398 4196035 ~ 4197864 (-)
AMCG00018209 NA coding upstream 1884 4333059 ~ 4341485 (-)
AMCG00018208 NA coding upstream 18831 4350006 ~ 4359890 (-)
AMCG00018205 NA coding upstream 39294 4370469 ~ 4380047 (-)
AMCG00018210 sbk1,LOC107388055 coding upstream 126662 4457837 ~ 4460720 (-)
AMCG00018223 NA coding upstream 273976 4605151 ~ 4610325 (-)
G114785 NA non-coding downstream 404863 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 913324 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 1173952 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 1237502 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 1317004 2996035 ~ 2998258 (-)
G114941 NA non-coding upstream 54758 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 258120 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 348365 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 489790 4820965 ~ 4821411 (-)
G115100 NA non-coding upstream 705556 5036731 ~ 5058586 (-)
G114838 NA other downstream 228231 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 1667451 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 1705783 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 2026400 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 2247678 2006906 ~ 2067584 (-)
G115020 NA other upstream 254887 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 314972 4646147 ~ 4651641 (-)
G115174 NA other upstream 955211 5286386 ~ 5287873 (-)
G115183 NA other upstream 968932 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 1025671 5356846 ~ 5366754 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023114 wdr90 coding NC_007135.7 CM002908.2 37484661 ~ 37531540 (+)
grasscarp (Ctenopharyngodon idella) CI01000329_00309094_00327100 WDR90 coding CI01000329 null 309094 ~ 327419 (+)