AMCG00018208


Basic Information

Item Value
gene id AMCG00018208
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4350006 ~ 4359890 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018208
ATGGAAGGTGTTTGGATACACAGATACCGGAAGCAACTTGTGAGGTCCATCTCGGGCCCCTTCCTGGAGAACATCGTGAGTCACATGAGGAAGGTGGAGCTGCTGAGCAGGGACGAGGCCAATCAGATCCAGGCAGCGGGGCTCCTGTCTGAGAAGGTCCGCACTGTCATCGACATCTTGGCAGCGAAGGGCACCCAGGGCTCCGAGTCACTGCAGGCCTTCATCGAGACCACGAACTCGCAGCTCTACCTCCTCATCACGCTGTACGACCCGATGGTGCAAAAACACGTGGAGATACTGCAGAGCCGCTATGGAGCCTGGTTGGAGCTGGGGCTGCAGCCAGGCAGGTCGTCCCTGGAGAGCATTAACAACCTCCTGCTGGTGGAGGGACTCTCGGACCTCCAGCAGAAGGAACATGATGTCATGCAGTGGCCTCTGGACTTCTCAGATACAGTTTCCTGTACAGACCCCAAAAAGGAGGTGCCCACGGACAGCCTCATCACTAACATCATCAGGGGTAACCTGTTCCCTGAGGCCTCTGTCTGGGTGACTTCTAGGCCCACTGTAGCTGCACAGATCCCTGGGGGGCTGGTGGACAGGATGACTGAAATCCAGGGTTTTGGGCCCAAAGACATCCAGGATTTCTTGCGTCAGATGTTCCAGGAAGGTGATGTGGCCTCCCAGGTGTTGTCCCACCTGAGCTCCAACAAAATCTTCCTGGTCATGTCCTATGTGCCCTGTGTTTGCTGGATCGTAGCTTCCACTCTTGGGTACTTTATAAGGAATGGCTCACAGGATGCGTTGCCCAGGACCTGGACAGAGCTCTACTCTTACTTTTTTAAGATGATGGTGGAAGGGGATTCCAAGGACAAGGAACCCCTGAAGATAGAGCAAGTGAGTGGAAGCAGCCGGAAACTGATGGGCAGCCTGGGGAGGTTGGCCTTTTACGGGTTGATCAAGAGAAAGTACACATTTTATGAACAGGACATGAAGGCCTATGGGATTGACCTGCCCTCCCTCCAAGGCAGCCTCTGCAGCCGCATACTGGTCAAAGAGGACTCCCCCAGCAGCCTGAGCTCGGGCTGCACCGTCTCGCTGCGGTCGGTGAACGTGGTGCACTGTCTTCAGGAGCTGCAGCACACCGAGCTGGCACGGACCGTGGAGGAGTCGCTCCGGAACGGCAACCTTGCAGGCAAGCTCAACTCGGTGAACTGCTCGGTGCTGGCCTATCTGCTGCAGGTGTCTGAGGAGTGTGCGGAGGAGACCAACCTCTCCAACTGCCTGAACTACAGCATCGTCAAGAGCCTGTTGCCACAGCTGCTCTACTGCAGCAACCTCAGACTGGAGAACAACAACTTTAAGGATGATGTTATGGAACTACTGGGCAGCTTGCTGAGTGCCAAGGATTGTCACCTTCAGAAGATCAGTCTGGCGGAGAATGCCATCAGTAACAAAGGAGCCAAGGCCATCAGCAGATCCCTCATGGTCAACAGGACCCTCACAGCTCTAGATCTCCGCAGCAACAGCATCGGGCCCAAGGGAGCCAAGGCCATGGCAGAAGCGCTGAAGATTAATCAAGGCCTGGTGTTTCTCAGCCTCCAGAACAACTGCATCGGAGACGAGGGGGCCAAGGCCATCGCAGAGATCCTGCAGACCAATCGCAAGCTGCTCATGATTCTCCTGCAGAAGAACTCCATTGGTGCAGAGGGAGCCAGGCGGATTGCAGATTCCCTGAGGAAGAACCGGAGTCTGAAAGAACTCATGCTTTCTGGCAACCAATTGGGTGACAAGGGGGCTTCGGCTCTGGCCCAGGCCCTGACAGAAAACCACAGCCTGGTCACTCTTCACCTCCGGAGTAACTCCATTAGCAACAAGGGGGTCACAGCGCTGACACACGCGCTCAAACACAACCGAGGACTCATCACCCTGAACCTTCGGGAGAACTCTATTGGGGTGGAGGGAGCGAAGGAGATTGCCAACGCACTACgagaaaacaacacactgaAAAACCTGGACCTGACAGCGAACCTCCTTCATGACGAGGGCGCGAAGGCCATCGCGGCGGCTGTCAAGTGGAATTTCATCAAGTCCAAAGCTGCCAAGGCCCTGGCTCAAGCACTACAGAGCAACAAAACCCTGCAGTGTCTGGACCTGCAGGAGAATGCCATTGGGGACGAGGGGATGGTGGCGCTGGCAGGAGCCCTCAAGACCAACAACTCCCTCTCTAAACTCTATCTGCAGGGAGTGTCAATGGGCAGGACTGGTGCCATCGCCCTGGCAGACAGCCTGAGGACCAACCAGACTCTGCACACGCTCGACCTGCGTGGGAATTCGATTGGGATGGAAGGAGCCAAGGCCATGTCCAATGCTCTGAAAGCCAACACCAGCCTCAGGATTTTAAATCTGCAGGAGAACTCCCTGGGCATGGATGGAGCCATCTTCATAGCCAACGCCCTCTCCGGGAACCACAAGCTCACCCACATCAACCTCCAAGGGAACCGCATCGGGGAGTCGGGGGCAAAGGTCATCTCTGACGCCATCAAAACCAATTCCCCGGATTGCGTGGTGGAGATCTGA

Function

GO: NA

KEGG:

id description
K22614 NLRC3, NOD3; NLR family CARD domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018208 True 2577 mRNA 0.56 20 4350006 4359890

Neighbor

gene id symbol gene type direction distance location
AMCG00018209 NA coding downstream 8521 4333059 ~ 4341485 (-)
AMCG00018207 LOC107677127 coding downstream 18831 4315262 ~ 4331175 (-)
AMCG00018206 rhot2 coding downstream 36639 4300555 ~ 4313367 (-)
AMCG00018199 rhbdl1,LOC102790881,LOC107677126 coding downstream 89256 4242278 ~ 4260750 (-)
AMCG00018198 rhbdl1 coding downstream 124723 4219821 ~ 4225283 (-)
AMCG00018205 NA coding upstream 10579 4370469 ~ 4380047 (-)
AMCG00018210 sbk1,LOC107388055 coding upstream 97947 4457837 ~ 4460720 (-)
AMCG00018223 NA coding upstream 245261 4605151 ~ 4610325 (-)
AMCG00018221 NA coding upstream 262380 4622270 ~ 4628633 (-)
AMCG00018219 NA coding upstream 279814 4639704 ~ 4640258 (-)
G114785 NA non-coding downstream 439607 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 948068 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 1208696 3140095 ~ 3141310 (-)
G114681 NA non-coding downstream 1272246 3077041 ~ 3077760 (-)
G114658 NA non-coding downstream 1351748 2996035 ~ 2998258 (-)
G114941 NA non-coding upstream 26043 4385933 ~ 4386891 (-)
G115021 NA non-coding upstream 229405 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 319650 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 461075 4820965 ~ 4821411 (-)
G115100 NA non-coding upstream 676841 5036731 ~ 5058586 (-)
G114838 NA other downstream 262975 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 1702195 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 1740527 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 2061144 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 2282422 2006906 ~ 2067584 (-)
G115020 NA other upstream 226172 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 286257 4646147 ~ 4651641 (-)
G115174 NA other upstream 926496 5286386 ~ 5287873 (-)
G115183 NA other upstream 940217 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 996956 5356846 ~ 5366754 (-)

Expression


Co-expression Network