AMCG00018210 (sbk1,LOC107388055)


Basic Information

Item Value
gene id AMCG00018210
gene name sbk1,LOC107388055
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4457837 ~ 4460720 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018210
ATGAGCCTGTCTCCAGGAGGAGCGGGGTGCGGCGGGGGCTCTCCGACGGGCAAGGTGGGCTGCTGCGGGGTGCCCATCGAGGACATGCAGGCCCTGGCCATCAGCTCGCTCTCAGCCGCCGACATCCACAAACACTACGAGCACATCCGCGAGCTGGGCAAGGGCACCTACGGCAAGGTGGACCTGGTGGCACACCGCACGCAAGGAACTAAGCTGGCCCTGAAGTTTGTCAACAAGAACAAGACCAAGCTGAAGAGCTTCTTGCGGGAGTACAGCATCACCAGCAGCCTGAGCTCCAGCCCCTTCGTCATCAAGGTGCTGGACGTGCTGTTCGAGACGGAGGAGAGCTACGTGTTCGGACAGGAGTACGCACCAGCCGGAGACCTTTTTGACATCATCCCCCCACAGgtggGGCTGCCGGAGGAGATGGTGAAGCGCTGTATCCAGCAGCTGGGCCTGGCGCTGGACTTCCTGCACAGCAAAAGCCTGGTGCACCGGGACGTTAAGCCCGAGAACGTGCTGCTGTTCGATCGTGAGTGCCGGCGGGTGAAGCTGGCTGACTTCGGCATGACGCGGCGCGTGGGATGCCGGGTGAAGCGCATCAGCGGCACCATCCCGTACACGGCGCCCGAGGTGTGCCAGGCCAGCCGGGCGGAGGGCTTCGTGGTGGACTGCAGCCTGGACGTGTGGGCCTTCGGGGTGCTGATCTTCTGCATGCTGACGGGCAACTTCCCCTGGGAGGCCGCCCTGCCCTCAGACGCCTTCTACGAGGAGTTCTGGCGCTGGCAGAAGGGCCCCTGCCGCCCGGGGGTGTTCCCCTCGCAGTGGCGCCGCTTCACCGACGACGCCCTGCGCATGTTCCAGCGGCTGCTCACCATCGAGCCAGACAAGCGCTGCACCGTCAAGGACGTCTTCTTCTTCGTCAAGTACGAGCTGATGAGCGAGCTGCGCCGGCGCCCGTCCTGCCGGGGCAAGCGGGCGGAGCGGGGCGTCCAGACGGGCTCCTGTAGCACCGCGCCCTCACGCTCCGGGCACAGACACGCCGAACAAGCCTCCGGGCAGGCCTCGACCTCTTGCCTCCGCCCGGCGCCCCTCAAACGCAGCGTCCTTCCCGACCCGCACTCCTCCCGGGGGGGCCCTGACCCCGGCCTGCACACCTCGCCAGGGCGCCAGGAAAAAGGCAAAGGCCAGATGGTGATGGCCACCGCCATAGAGATCTGCGTCTGA

Function

symbol description
sbk1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation and peptidyl-threonine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human SBK1 (SH3 domain binding kinase 1).

NR:

description
PREDICTED: serine/threonine-protein kinase SBK1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08858 SBK; serine/threonine-protein kinase SBK

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018210 True 1227 mRNA 0.66 3 4457837 4460720

Neighbor

gene id symbol gene type direction distance location
AMCG00018205 NA coding downstream 77790 4370469 ~ 4380047 (-)
AMCG00018208 NA coding downstream 97947 4350006 ~ 4359890 (-)
AMCG00018209 NA coding downstream 116352 4333059 ~ 4341485 (-)
AMCG00018207 LOC107677127 coding downstream 126662 4315262 ~ 4331175 (-)
AMCG00018206 rhot2 coding downstream 144470 4300555 ~ 4313367 (-)
AMCG00018223 NA coding upstream 144431 4605151 ~ 4610325 (-)
AMCG00018221 NA coding upstream 161550 4622270 ~ 4628633 (-)
AMCG00018219 NA coding upstream 178984 4639704 ~ 4640258 (-)
AMCG00018222 metrn coding upstream 205465 4666185 ~ 4672356 (-)
AMCG00018230 NA coding upstream 228095 4688815 ~ 4689879 (-)
G114941 NA non-coding downstream 70946 4385933 ~ 4386891 (-)
G114915 NA non-coding downstream 105474 4295311 ~ 4352363 (-)
G114785 NA non-coding downstream 547438 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 1055899 3400432 ~ 3401938 (-)
G114720 NA non-coding downstream 1316527 3140095 ~ 3141310 (-)
G115021 NA non-coding upstream 128575 4589295 ~ 4590068 (-)
G115037 NA non-coding upstream 218820 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 360245 4820965 ~ 4821411 (-)
G115100 NA non-coding upstream 576011 5036731 ~ 5058586 (-)
G115144 NA non-coding upstream 692332 5153052 ~ 5203873 (-)
G114838 NA other downstream 370806 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 1810026 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 1848358 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 2168975 2281700 ~ 2288862 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 2390253 2006906 ~ 2067584 (-)
G115020 NA other upstream 125342 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 185427 4646147 ~ 4651641 (-)
G115174 NA other upstream 825666 5286386 ~ 5287873 (-)
G115183 NA other upstream 839387 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 896126 5356846 ~ 5366754 (-)

Expression


Co-expression Network