AMCG00018220


Basic Information

Item Value
gene id AMCG00018220
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4646147 ~ 4651641 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018220
ATGTTTCGCAGCTGGCGGTTCCCGGGACCTCGTTGGCCGGCGCACACGCTGCTGCCTCTTCCGGTTCAGGCGGGCATGGACCAGGACACCCCGGAGGAGGTCTTGGCCGAGTTCAAGGACAGGCGGCTGGGGGTCGGGGGCCTTCTGCAGATCGCGGCGGGCACTGGGCTGACCGCCTACGCCGTGTGGGTGGGCGTGCTCATGCCAGGCTTCCGCAGGGTGCCTTTGAGATTACAGGTGAGCGGGAACGAGCGCGGCCTGAGACAGGACGTGACCCGCGCCTCTCAGGAAGTGCTCTGCTGGGACCTCCTCCATGTCGTCCGTGTGTCCCCTCCTGAGGCTGTCACGGACGTTCCCTATCTCCCAGCCAGCCGGGTGCAGGTGAAGAACGTGATGACGCTGCTGAAGGGTCGGTCTGGGCGCATCGCAGACCTGGGCTCCGGAGACGGCAGGATTGTACTGGAGGCTTACAGACAGGGCTTCTCTCCGGCAGTGGGCTACGAGCTGAACCCCTGGCTGGTCCGCCTGTCCAACTTCCACGCCTGGAGGGCCGGCCACTCTGGGAAGGTGTCCTACCTGCGGGAGGACCTGTGGAAGGTCAGTCTAGCTGATTGTAAGAACATCACAGTGTTTCTGGCTCCTAGTGTGCTCCCGCTCCTGCAGGAGAAGCTGATGACGGAGCTGTCTTCAGACGCGCTGGTGGTCGCCGGCCGCTTCCCCTTCCCCGGCTGGACAGCGTACCGCATCGAGGGCGAGGGGGCGGACCGCACCTGGGCCTACAACATGGGGGCACAGCGCCAGCCTGGCACCCACACACAGCAGGCAGCAGAAGCCTCCAGTGCCCAGCCAGACGTGCGTACAAAGCCGTAGCTCTGCTCTCCTCCAGCCCGGGAAGACTGCGGACCTGCTCTGCCTGGTTCACGCTGGAGAGATTGGCGGTGGGCGTCCGAGTCACGGCACACAGCTTGGGTGGACCAGTCTtgccaaaaaatacataattcatttattcaaaGACAAGGTTCACTACGTCCCGTACCTACGCTGTTTTTGgtgggatttgtttttacataaatcTGGGTTCAACATCCCCATCTACAGTCTCAACGAGAGACCAGAgtacttaaaaataattgtattttaggTTTTTAGATTGCTGTTTTAAAAGTGGAGGAAAGATTATCCCCCAGCATGTGTGCTATATATAGTTGATTTTAAACTGTTACTCTGAACCCCAACACTGTAATTCCTAGTGGGGCTCATAGATGTGGTCAGTGGAGTCTCAAAATAATGTTAAGTATTCCCAATAAGGAGAGTGGAGTACCAGGATATGTTAGCCATAAGTCATCTGGGAAGAGTCAATATGAACAGTGATCTCTTCATGTTTTCACCTTTGAGACCAGTGCTACGATCTATAGACAGTCAGAACTACAATGCAGAAGgttttagtaatttaaaactGGTTTATTTAAGTCTTATCAGTTCACAGTCCTGTGTTTCATATCTTGTGAAGGTAAATAACGGGGCTTTTTATGTAGCTGTAATGGTCCATATATGTATCGTTAACCTGCTACACTTTTAGCTTTTGTTACATACCACCTGGTCCTGTAACACCCTTTGAAAAGGCAATCTTGATGAGTTAATCTATaaccaaaaaagaaagtgataattttttcatatttgttgccaataaaataattacagaataaGCCTCAGAGACCAAATATCTCATTTGTGTCCCAACTTCACTCCTCAGTGTTCATCAAGGGGGAAACAACAGGTAAGAAAGACGACAGGTGAGAATTTCTTAATGGGGCTTGTCTGTACAATTGCCTTATTGCATTTCTGAAACCAACAGCCACCCCCAACACAATGCCAGATAGTGATTCAAATCGAGAGGGTTCCTTGTCAGCGTATCAGCCGATCGCGTCTGGGGTTCATTCCTGCTGTGTGGGATCTGCTTCAGACCGGTGGCCACGTGGCGGAGGTGTttggtcagaggtcagaggtcggAGCTGGGGTTCCTTTTGCCGCGGCGCTGGAATCGTGGCTCGGGGGCGTCCGCGCTGTGGGCACGCCCTGTATCGGTGCCCATCAGCTCCCGCAGCCGCATGATCTCCTG
>TU144068
TCGTTGGCCGGCGCACACGCTGCTGCCTCTTCCGGTTCAGGTTCTCAGCAGCTGCCGATGTAGAGAGGACCCTCTGAGCTGCTGAACTGTGGCCCTCGGGGGACAGACCCTGTTCTGTTGGGATCCTTTGACGTCGCTGTGTCGTCCTCGCAGGCGGGCATGGACCAGGACACCCCGGAGGAGGTCTTGGCCGAGTTCAAGGACAGGCGGCTGGGGGTCGGGGGCCTTCTGCAGATCGCGGCGGGCACTGGGCTGACCGCCTACGCCGTGTGGGTGGGCGTGCTCATGCCAGGCTTCCGCAGGGTGCCTTTGAGATTACAGGTTCCCTATCTCCCAGCCAGCCGGGTGCAGGTGAAGAACGTGATGACGCTGCTGAAGGGTCGGTCTGGGCGCATCGCAGACCTGGGCTCCGGAGACGGCAGGATTTGGGCTACGAGCTGAACCCCTGGCTGGTCCGCCTGTCCAACTTCCACGCCTGGAGGGCCGGCCACTCTGGGAAGGTGTCCTACCTGCGGGAGGACCTGTGGAAGGTCAGTCTAGCTGATTGTAAGAACATCACAGTGTTTCTGGCTCCTAGTGTGCTCCCGCTCCTGCAGGAGAAGCTGATGACGGAGCTGTCTTCAGACGCGCTGGTGGTCGCCGGCCGCTTCCCCTTCCCCGGCTGGACAGCGTACCGCATCGAGGGCGAGGGGGCGGACCGCACCTGGGCCTACAACATGGGGGCACAGCGCCAGCCTGGCACCCACACACAGCAGGCAGCAGAAGCCTCCAGTGCCCAGCCAGACGTGCGTACAAAGCCGTAGCTCTGCTCTCCTCCAGCCCGGGAAGACTGCGGACCTGCTCTGCCTGGTTCACGCTGGAGAGATTGGCGGTGGGCGTCCGAGTCACGGCACACAGCTTGGGTGGACCAGTCTtgccaaaaaatacataattcatttattcaaaGACAAGGTTCACTACGTCCCGTACCTACGCTGTTTTTGgtgggatttgtttttacataaatcTGGGTTCAACATCCCCATCTACAGTCTCAACGAGAGACCAGAgtacttaaaaataattgtattttaggTTTTTAGATTGCTGTTTTAAAAGTGGAGGAAAGATTATCCCCCAGCATGTGTGCTATATATAGTTGATTTTAAACTGTTACTCTGAACCCCAACACTGTAATTCCTAGTGGGGCTCATAGATGTGGTCAGTGGAGTCTCAAAATAATGTTAAGTATTCCCAATAAGGAGAGTGGAGTACCAGGATATGTTAGCCATAAGTCATCTGGGAAGAGTCAATATGAACAGTGATCTCTTCATGTTTTCACCTTTGAGACCAGTGCTACGATCTATAGACAGTCAGAACTACAATGCAGAAGgttttagtaatttaaaactGGTTTATTTAAGTCTTATCAGTTCACAGTCCTGTGTTTCATATCTTGTGAAGGTAAATAACGGGGCTTTTTATGTAGCTGTAATGGTCCATATATGTATCGTTAACCTGCTACACTTTTAGCTTTTGTTACATACCACCTGGTCCTGTAACACCCTTTGAAAAGGCAATCTTGATGAGTTAATCTATaaccaaaaaagaaagtgataattttttcatatttgttgccaata

Function

GO:

id name namespace
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018220 True 2119 mRNA 0.53 6 4646147 4651641
TU144068 False 1622 TUCP 0.52 6 4646577 4651612

Neighbor

gene id symbol gene type direction distance location
AMCG00018219 NA coding downstream 5889 4639704 ~ 4640258 (-)
AMCG00018221 NA coding downstream 17514 4622270 ~ 4628633 (-)
AMCG00018223 NA coding downstream 35822 4605151 ~ 4610325 (-)
AMCG00018210 sbk1,LOC107388055 coding downstream 185427 4457837 ~ 4460720 (-)
AMCG00018205 NA coding downstream 266100 4370469 ~ 4380047 (-)
AMCG00018222 metrn coding upstream 14544 4666185 ~ 4672356 (-)
AMCG00018230 NA coding upstream 37174 4688815 ~ 4689879 (-)
AMCG00018226 NA coding upstream 43721 4695362 ~ 4697902 (-)
AMCG00018227 stub1,LOC106601937 coding upstream 84724 4736365 ~ 4744572 (-)
AMCG00018228 NA coding upstream 94939 4746580 ~ 4761133 (-)
G115021 NA non-coding downstream 56079 4589295 ~ 4590068 (-)
G114941 NA non-coding downstream 259256 4385933 ~ 4386891 (-)
G114915 NA non-coding downstream 293784 4295311 ~ 4352363 (-)
G114785 NA non-coding downstream 735748 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 1244209 3400432 ~ 3401938 (-)
G115037 NA non-coding upstream 27899 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 169324 4820965 ~ 4821411 (-)
G115100 NA non-coding upstream 385090 5036731 ~ 5058586 (-)
G115144 NA non-coding upstream 501411 5153052 ~ 5203873 (-)
G115157 NA non-coding upstream 576339 5227980 ~ 5243187 (-)
G115020 NA other downstream 57850 4586062 ~ 4588297 (-)
G114838 NA other downstream 559116 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 1998336 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2036668 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 2357285 2281700 ~ 2288862 (-)
G115174 NA other upstream 634745 5286386 ~ 5287873 (-)
G115183 NA other upstream 648466 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 705205 5356846 ~ 5366754 (-)
G115320 NA other upstream 1298780 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1958992 6610633 ~ 6652773 (-)

Expression


Co-expression Network