AMCG00018221


Basic Information

Item Value
gene id AMCG00018221
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4622270 ~ 4628633 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018221
ATGGCGGTGTATTTCGATCACCGTATTGAAGCTCCCGACTCAAACGGGGCGCCCTGTCAGATCGCCTGGCACTCGTCCCAGCCTGTGCTCGGGGTGGCCTCTCTCAGCCCCGCCGCTGGGGGCTCTGTTGATCTGTACCTCCAACAGGGGGAGCATGTTGGTAATTCGCACATTGAGCGCCCGTTCCAGCCCACGGTGCTGCGCTGGCATCCTGCTAAGCCCGTGCTGGCCGTGGGCTGGGAGACGGGGGAGGTGCTCTTACACACCCACCCGACTGGGGAGCAGACGACGCTGTCCTCTGCTCACAGCGCCTGCATCACCTTGCTGGAGTGGAGCAGCAATGGGAGCCGCTTGGTCACTGGGGACCAGCTGGGGGTGCTGGCGGTGTGGAGGGCGGACGCTCGTGGCAGGCTGCAGGGGGCTCCGCTGGTGAAGCATGATTACGGCAAGCCATTGACCTGCTGCGTCTTCAGACCGGCACCTCCTGGAGAGGATGTGGCACAGCTGGCTCGGGCAGCAGTGAGCGGAGACGAAAGCGCCCTGGACATGTTCGGTTGGAGGAAGGCTGGGAAGGGGACGTCCCTCAAGCTGGGACCCCAGGAAGGGCTGAGCTGCTTTGTCAGCACCGACGACGGCGGCGTGCACTGCCTGGACGAGAAGGGCAAGAGCAGCCAGGTTCTGAGTGCGGACGGCCCCGTGCAGAAGCTGCTGTACCTGGAGAGGCGAGACATGCTGGTAGTGATCACGGAGACGCTGCTGCTCTCCCAGTACAGCGTGGGGCCAGAGGGCGGCACCCAGGAGCTCATGAAGGTGAAGCTCAGTGGGAAGAGTGGGCACGGCGCCGACATGGACTGGGCCGGACAGGGGCTGCTGATCACGGCCACGGGGGAGGTCGTCATCAGACTCTGGGACCTGGAGCGAGATGATAACTACGTGCTGTCTCTGGATGTAAACCTGGGCTTTGAGTCGGGAGAGACGCTGAACTGTGTGTCGTACTGTGCTGCAAAAGGTATCCTGGCGGCGGGGACGGGCCGGGGCCGCATTGCCATGTGGCGGAAGGTGCATCTGACCAACCAGAGCGGGCAGAAGACGGACGGGAAGGGCCAATGGCATCTGCAGACTCCAACGGAGGTAGAGGGCAACGTCACCCAACTCCAGTGGGGCTCCGGTCTGAACCTGCTGGCCGCCAACGGCGTGAGCACTGTGCTGATCCTCTCGGAACACGTCATGTCCGCACACTTCAGCCAGCAGGTGGCAGCGGTGCAGCTCACACCCAACCAGCTGAGCCTGAGCTACTTCAGCACAGGGGCGCAGCACAGCCTGCGCACAGACATGCACGTCAAGGGCATCTGTGTCGCCAAGGATACCGTGACGGTCTGGAACGGGAAGCAGGTGTCGGTATTTGAGCCGGCAGGCGGAGCTCTGTGCAGCGCAGGCTCCTTCCCTTGCGAGTCCCTGGTCCTCGCGATGCACGAGGAGAACATCTACACCGTTGAGCCCAACCGGGTGCAGGTCCGGACCCTGCAGGGCACAGTGAAGCAGCTCCTGGCCTTCTCCGAGGTGGAGGGCACCCCTGCGCTCCTGAACGTCTGCAGGACCTTCCTGGCTGTGGGCACCGACACCATGCACGTGAAGGTCTTCGATCTGTCCCGCAGGGAAGCAAAGCCGCACTGCACCGCAAAGAACCTGGCTGAGCTCATCCCAGGCCTGGGGGCCCTGTCTTCGGTCAAGTGCAACGCCAATGGCAGCCAAGTCAGCGTGCTCGTCACCCGGGCCGACGGGAGCCCTGACTGCCGGGTTTACTTCTACGATGTGGAGATGGACATTCTCACCTACTTCGACTTCTCCACCGGCCGACCTCCTACCGGGAGCTTCCAAGCAGAGGAGCCAGAGAGGGCCCATTCGGACAGCAGCGAGTTGTGCGGCCGCTGCCCGGTCACTCAGTTCTGGGACGAGAGCGAACCCCGACTGTTTGTGTGCGAGACGGAGGCGATGGACCCGGCCATGCTCAGCCCTGCCCGCGTGGAGCAGgaCGAAGTGCTGGTGGTGTCCTTCTTCACTACGCAGGAGCACGGGCTGCTGCTCCAGGACTCCTACCCGAGGCCGGCGGGCGTGCAGGGGCTGCTGGCTCTCGACGTGCCCTTTTACTACTTTACCTGCAAGCCTGGGGAGAGCGAGGGCGCTCCGGCCCCGTCCTCTGCCCCTCAGATGGTGTCCCGGCGGGCGATGCGGGACTTCGTGGGCCTCGAAGACTGCGACAAGCCCACCCGGGACGCCATGCTGAACTTCAGCTTCTACCTGACCATCGGGGACATGGACGAGGCCTTCAAGTCCATCAAGCTCATCAAGAGGTAG

Function

GO: NA

KEGG:

id description
K19672 IFT140; intraflagellar transport protein 140

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018221 True 2355 mRNA 0.64 17 4622270 4628633

Neighbor

gene id symbol gene type direction distance location
AMCG00018223 NA coding downstream 11945 4605151 ~ 4610325 (-)
AMCG00018210 sbk1,LOC107388055 coding downstream 161550 4457837 ~ 4460720 (-)
AMCG00018205 NA coding downstream 242223 4370469 ~ 4380047 (-)
AMCG00018208 NA coding downstream 262380 4350006 ~ 4359890 (-)
AMCG00018209 NA coding downstream 280785 4333059 ~ 4341485 (-)
AMCG00018219 NA coding upstream 11071 4639704 ~ 4640258 (-)
AMCG00018222 metrn coding upstream 37552 4666185 ~ 4672356 (-)
AMCG00018230 NA coding upstream 60182 4688815 ~ 4689879 (-)
AMCG00018226 NA coding upstream 66729 4695362 ~ 4697902 (-)
AMCG00018227 stub1,LOC106601937 coding upstream 107732 4736365 ~ 4744572 (-)
G115021 NA non-coding downstream 32202 4589295 ~ 4590068 (-)
G114941 NA non-coding downstream 235379 4385933 ~ 4386891 (-)
G114915 NA non-coding downstream 269907 4295311 ~ 4352363 (-)
G114785 NA non-coding downstream 711871 3908019 ~ 3910399 (-)
G114739 NA non-coding downstream 1220332 3400432 ~ 3401938 (-)
G115037 NA non-coding upstream 50907 4679540 ~ 4679749 (-)
G115071 NA non-coding upstream 192332 4820965 ~ 4821411 (-)
G115100 NA non-coding upstream 408098 5036731 ~ 5058586 (-)
G115144 NA non-coding upstream 524419 5153052 ~ 5203873 (-)
G115157 NA non-coding upstream 599347 5227980 ~ 5243187 (-)
G115020 NA other downstream 33973 4586062 ~ 4588297 (-)
G114838 NA other downstream 535239 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 1974459 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2012791 2609145 ~ 2609479 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other downstream 2333408 2281700 ~ 2288862 (-)
AMCG00018220 NA other upstream 17514 4646147 ~ 4651641 (-)
G115174 NA other upstream 657753 5286386 ~ 5287873 (-)
G115183 NA other upstream 671474 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 728213 5356846 ~ 5366754 (-)
G115320 NA other upstream 1321788 5950421 ~ 5951055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00476515_00484343 IFT140 coding CI01000329 null 476515 ~ 484953 (+)