AMCG00018226


Basic Information

Item Value
gene id AMCG00018226
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4695362 ~ 4697902 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018226
ATGTCGAAGGAAGACCTCACCTGCAAGGTCAGCTCCATCTACAAGCACAAGGAGCGTAAGCCCAAGAAGCCCCACTACATCCCTCGGCCATGGGGGAAGCCCTACAACTACAAGTGCTTTCAGTGCCCCTTCACGTGCATGGAGAAGTCCCACCTGTACAACCACATGAAGTACAGCTTGTGCAAGAACTCCCTCTCCCTGCTCATTGAGTCCGATTGGCCCTACAAGAAGGGCAACCTCCTGCATCCCGAGCAGGTCCGCCCCTTACAGACGGGGCCCCGCCTCCGAGGGCCGGGCCGCGAGGAGCTGGATCCGACCCCTCTAAGCGACGACCAATCCAGAGCCGCGCAGTCCGAGGTCTCCTTCGGTGGGGAGGAGGCcgaggagggagaggagcacGGTGACGGGGAGACGAGTCATGGGGAGGGCCCAGAGGAGGCGCAGTCCACCAAAGAAGGCAAGGACCGTGTAGACAATGTCACCCGGAGCAGCACAAAGAGGCCCAAGCAGACCGAGGCTGATTTTGTCATCACAGATGTCTTCTCCCTCGAAGACCAGCTTCTCAATGCCAGGGCGGTGGAGGTGGAAGCAAAGCTAAAACACTATAAACTTTCTAAAACCTGCCTGACTGGCCCTAGCCTTCTCTCTGAGCAGTGGCGTCTGCTGGCAACCAGCCACAGGAAGGCCGGCTCAGAAGGTTCCCTACAAGACAGCGGCTCCATACCTTgttacccccctcccccaacctTTGCAGACTGTCAGGACCCCCCTGGCCTCAATCTCTCAGTCCTGGGAGTGAGCTACCCTCTCAGCCCAGGCCTATTCTCCTACGTCAACCCCGCAGTTGCCGGCACAACCCCAACCCATGCTCAGCTCGCCCAGCTCCCCTTCCTGGCATCTGCCGCCCAACTCATGCAACCTCCCTCCAGCTCGTTACCCCACACAGACAGAACCATCCTGCCACCTCGCTTCTACTACCCTCTGCTGTGTGAGCACGCGTTTGGATCTGTGCAAGAACCCGTAAAGGGAGTCAAGCCTGGCCAGCCCTCCCCAGCCAGCATGGACCCCAAGACCCCGTCCAGCTACCCACCCAAGATCAGCCTGTGGAAAGTCCCAGCTTTGCGCCCCAATGCCAGTGTCATTCCTCCAGCAGCCTGGGCCTCCCATCAGCAAGTCCCAGTGTCCCCTGAGGCTGGGTACAAGGCAGCGGAGGAGAAGGCCCAACAGGCTGTGGGGAAGGAGAGTAAAGTGGGATACTGGAGCCACAAGGCAGCTGTGGACGTCCCTCCATTAAGAGAGCAGGCGAGCAAGAGAACAGGGGCCCCCCTAGAGAGTCAGGAGACCCTTCCAGAGAAGAAGCCCCTCCTGGGATGCACACTGGACCTTCTCAAGAACATCCGGGGTGCCCCATCACTCTCTGTGGCCACAGACAAACTCCTCTTCCACAGCAGTCGGGATTCAGGAGGCCACCCGCAAGAACCATCTCCAGCACTGAAGTCTGGGAAAGCTGTGGACAGAGTGGCGAGGAGAGCAGAAGAGCCAGATGAGTCAGTGGTGCTTTTGGGAGACCTCTCCAAGGCCCTGCAGGAGTACCAGGAGGCCGAGCGCAAGATCTCCCGTCTGGTGAAGGAGGACAGCCCCGGCCAGCGCTACCTGAGGGAGCACCTCTACAAGATCCGTGGAGAGCTCTCACACATCCATCAGGCACTGGAGAAGACAGCCAGGCAGCATGAAGGGCCCCTGGACCTCTCTGTCAAGAAGACTCCAGACTGCAACCCGGGTGGAGGAAGAGGTCAGTGTTCAGAGGGCAAGAGAGGAGTCCCTGAAGAaacagaagaggaggaggcagaagacgaagaagaagaggaggaggaagaggaggaggaggatgagggaAGCGAGACGGATGGCAAGATCCCATCCCAGGAAAGCCGCAGACAGTCCCGGGAAGTCCTGCTCAAGATGAGCCACTCAGGGTTGCCTGGGGTGAGCCTAGGTGCTGTGGTCAAGATGGAGATGGTGTCCCCCAGCGGCCTAGGGCTTCGGCCAATTCCAACGGAGGCAGTGTGGCCAAGTCGGACAACCAAGTGCGAGGCAGACTCTAGTGTGCTTCTGTGTCCCGATGGCCGCTCTGCTCCACTGGTCTTCACTGACTTCAGCGCAAAGAGCCTGAAGAGACCCCCATCCAAAGAGCACCCAGCGGAGGCGCTTTGTCCTCCTAGCCCCCTCACAGCCATCGACCCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018226 True 2247 mRNA 0.60 2 4695362 4697902

Neighbor

gene id symbol gene type direction distance location
AMCG00018230 NA coding downstream 5483 4688815 ~ 4689879 (-)
AMCG00018222 metrn coding downstream 23006 4666185 ~ 4672356 (-)
AMCG00018219 NA coding downstream 55104 4639704 ~ 4640258 (-)
AMCG00018221 NA coding downstream 66729 4622270 ~ 4628633 (-)
AMCG00018223 NA coding downstream 85037 4605151 ~ 4610325 (-)
AMCG00018227 stub1,LOC106601937 coding upstream 38463 4736365 ~ 4744572 (-)
AMCG00018228 NA coding upstream 48678 4746580 ~ 4761133 (-)
AMCG00018229 NA coding upstream 65826 4763728 ~ 4786482 (-)
AMCG00018232 NA coding upstream 125923 4823825 ~ 4826013 (-)
AMCG00018239 NA coding upstream 451998 5149900 ~ 5155174 (-)
G115037 NA non-coding downstream 15613 4679540 ~ 4679749 (-)
G115021 NA non-coding downstream 105294 4589295 ~ 4590068 (-)
G114941 NA non-coding downstream 308471 4385933 ~ 4386891 (-)
G114915 NA non-coding downstream 342999 4295311 ~ 4352363 (-)
G114785 NA non-coding downstream 784963 3908019 ~ 3910399 (-)
G115071 NA non-coding upstream 123063 4820965 ~ 4821411 (-)
G115100 NA non-coding upstream 338829 5036731 ~ 5058586 (-)
G115144 NA non-coding upstream 455150 5153052 ~ 5203873 (-)
G115157 NA non-coding upstream 530078 5227980 ~ 5243187 (-)
G115160 NA non-coding upstream 533716 5231618 ~ 5233417 (-)
AMCG00018220 NA other downstream 43721 4646147 ~ 4651641 (-)
G115020 NA other downstream 107065 4586062 ~ 4588297 (-)
G114838 NA other downstream 608331 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2047551 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2085883 2609145 ~ 2609479 (-)
G115174 NA other upstream 588484 5286386 ~ 5287873 (-)
G115183 NA other upstream 602205 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 658944 5356846 ~ 5366754 (-)
G115320 NA other upstream 1252519 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1912731 6610633 ~ 6652773 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00555504_00558635 NA coding CI01000329 null 554827 ~ 558635 (-)