AMCG00018240


Basic Information

Item Value
gene id AMCG00018240
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5155372 ~ 5171519 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018240
ATGCGCACTTGCCCTGCCGCACAGCTGTTCTCCGGTCTGCCCGTCCTGCCGCCTTCGCGTCCGGGCATGCGCAGTGCCGGGCTGGGGCTGAGCTGGAAGTGCAAGCTGTCAAAGCGGGGGGAGGAGGCCCTGACGCTGCTGAGCCTGCGAGTATTGCCTTCAGCCGAGACGACTCTACTTCCCTCTGTTTCTGTGTCCCAGTGGGAAATCAGCACCGGCGGGCCAGCCAGTGAGCTCAGGATGCACCTCTCAATCCGGCCCAGGAGAGGGTGTCTGGTGCTGTGCCTGACCTTGTCCCTGCTCACCCTGCTCCTGCAAAGTCTCTTGGTTCCAGAGACGTCCAGAGAAATGCCTCCGGGGAAGTCACCAGCTGTGAATGACGGCCCCCAGCACAGCGTGAGGAGGTTGGCCCTGCGCTTGGAGGCCCTGAGCTCGCAGATCCAGCGCCTGACGCGAGACAACCCCCCGTCTGGTCTACACGACCTCATCCAGGCCCTCCAGCGGTTTAAACAGGACCACGAGAATCTAGTTCACACTATGGAGAGGGAGCTGCTGAGGGTGTCACAGAAGCTGGACCAACTTCTCCAGAGAAACCCAACAGCTGGACCCCATAATCTCACTCCACTGAGAGGTCACCCTGAGGCTTGTGAAGTTCCCGATGATCCAAATTTCCCCCTGTGTGCAGGGAAGGTACAGTTCCTGCGAGTCGGGTGGCGTTCTGACCCCTGCTATGTGTTCTATGGAGTGGACGGCAGTGACTGCTCCATCCTGGCCTACCTAAGCGAGAGAGAGGACTTCTGTCCCCCTGCAGCCGGCCGAGGCCACGCCGCCGGCACACGCGGGCACCAGGAACCGCAGGGGGAAAAACGAGAAGTGGGCATCTTAGGAGAATGTGTAGGCAGGGAGGAAGGCCATTCTCAGTGTAGTCATTCACTGAAGCATGTTTATCCCGTAGAAGCGTTGCAAAAATCTCCCCTTTAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko04360 Axon guidance
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018240 True 981 mRNA 0.60 8 5155372 5171519

Neighbor

gene id symbol gene type direction distance location
AMCG00018239 NA coding downstream 198 5149900 ~ 5155174 (-)
AMCG00018232 NA coding downstream 329359 4823825 ~ 4826013 (-)
AMCG00018229 NA coding downstream 368890 4763728 ~ 4786482 (-)
AMCG00018228 NA coding downstream 394239 4746580 ~ 4761133 (-)
AMCG00018227 stub1,LOC106601937 coding downstream 410800 4736365 ~ 4744572 (-)
AMCG00018246 nubp2,LOC102775692 coding upstream 34864 5206383 ~ 5212355 (-)
AMCG00018248 NA coding upstream 51368 5222887 ~ 5225675 (-)
AMCG00018247 NA coding upstream 62101 5233620 ~ 5269405 (-)
AMCG00018245 NA coding upstream 107835 5279354 ~ 5283933 (-)
AMCG00018253 NA coding upstream 139638 5311157 ~ 5322315 (-)
G115100 NA non-coding downstream 96786 5036731 ~ 5058586 (-)
G115071 NA non-coding downstream 333961 4820965 ~ 4821411 (-)
G115037 NA non-coding downstream 475623 4679540 ~ 4679749 (-)
G115021 NA non-coding downstream 565304 4589295 ~ 4590068 (-)
G114941 NA non-coding downstream 768481 4385933 ~ 4386891 (-)
G115157 NA non-coding upstream 56461 5227980 ~ 5243187 (-)
G115160 NA non-coding upstream 60099 5231618 ~ 5233417 (-)
G115170 NA non-coding upstream 107567 5279086 ~ 5279296 (-)
G115172 NA non-coding upstream 112555 5284074 ~ 5284333 (-)
G115173 NA non-coding upstream 113426 5284945 ~ 5285516 (-)
AMCG00018220 NA other downstream 503731 4646147 ~ 4651641 (-)
G115020 NA other downstream 567075 4586062 ~ 4588297 (-)
G114838 NA other downstream 1068341 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2507561 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2545893 2609145 ~ 2609479 (-)
G115174 NA other upstream 114867 5286386 ~ 5287873 (-)
G115183 NA other upstream 128588 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 185327 5356846 ~ 5366754 (-)
G115320 NA other upstream 778902 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1439114 6610633 ~ 6652773 (-)

Expression


Co-expression Network