AMCG00018241 (mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909)


Basic Information

Item Value
gene id AMCG00018241
gene name mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5271199 ~ 5278925 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018241
GGGGCGGTCTGGGACGCAGGGAGGAAGATGAGCCTCTGCCCGGCTGCTGCACACTAAGCACTGCGAGGGTAACAATGGGCAAAGTTGCGGAAAAAGCATTTTACCGGTTCCTGGTCCTGTTCTTCAACTGTCTGCTTACGTTCGGCTCCTACTTCTGCTTTGACATCCCCAGCGTCCTGCAGGATCAGTTCCAGGGGAATCTGACGTGCGCCAATTCGACGGCAACAAATGGGACCGGAGAGTGTGTGGAGGGGCTGGGCATGACTCCCCAGCAGTACAATCTGCTCTACGCCATCTACGCATGGACCAATGCAGTGGTAGTGATCATGGCTGGCTTTCTCATTGACAAGCTGGGAAACCGCTTTGGCGTCTTCCTGTTCTCCTTCCTGACGGTGCTGGGATCGACCATCTTTGCCCTGGGATCGCACTTTAAGGGCACTGTGTACCTGCTGCCCCTGATGCTGACTGGACGGCTGCTGTTTGGCTCTGGGAATGGCTCTCTGACCATTGTGCAGAACCGCATCACCGCCTTCTGGTTCAAGGGGAAGGAGCTGGCGCTGGCGTTCGGCCTGACCCTGGCTTTCTCGCGCCTGGGCTCTGTGCTCAACTTCCTCCTCACGCAGAGGGTGGAGGCGCAATATGGGATCCAGTGGACGCTCTGGGGAGGTACCTTCCTGTGCGTACTCGGTTTCCTGGCGGCCATTATGGTCAGCACTCTGGACAAGGTGGGCATGAAGCAGCTGGGCCTGGATGGCGCCATTCAGGAGGAGTCCAAGAAAGTGCGGGTGCAGGACCTGGGCAAGCTATCGCTGAGGTACTGGCTGCTCGTGCTCACCATCATGTTCTTCTACAACGGCATCTTTCCCTTCATCGCCGATGCCAGTAAGTTCATCCAAGACAAGTACAGCGACTACAGCCAGAAAGAGGCGGCCTACATCGCCGGGGCCGTGTACGACAGTTCGTTGGTGCTCTCCGCCGTGGTGGGGATACTCATCGACTACGTTGGTCTTCGCGGCGTGTTCGCAGTGGGCTGTGCTGCCCTCACCCTGCCCGTGTTTGCCCTCCTGGCCTTCACCTTCGTCCCACCGCTGGTCTCCACCATCTGGCTTGGCGTGACCTACTCCTTTGCTGCGGCAAGCATGTGGCCATCAATTCCCCTGGTCGTTCCTCAGGCTACTCTTGGGACAGCTATGGGCCTTGCCACCTCAGTGCAAATGATTGGGATTGGGATCTCCAACCTTATAGTTGGGCAGATGTTAGGAACAAAATCAAGTGATGCGAAGATCCCACTGTGGCGATGGCAGCACATGATGATCTTCATGTTGGCCAACACCTTGGCCTGCATAGTTACCGCTGTGGGGCTGAACATTGTAGACCAACGCCAGGGTGGGACCCTCAATAAGTCGACAAAGCGCTCCCAAGCCACCCAAGACCCTCCTGCCCCGTCTTCAGACACTGCCCCCCTGCTGGAAGAGGATGGACCCCACCCCGAGCCCATTAATAGCTAGAGTGAGAGGTGTGAAAGGGACAGGATCTGGACTCAAAGGGAGAGAGTGCCTACACGTGCACTATGAATGTGGGCTTCCAGTGTTATGAACTTTGAAGACTTTGTGGAGGTGATCTAATTTCCAACAAACACTTTAATATACTATATTTTTATGGATATAAGTAAGGGAAAGATGTTAAGAGGTTTAAGATTATTACAACTgattatgtataaaatattcTGGGTTTGAGCACCCAAGTCTAAAATCAGTGATTTAAGCCATCTCAAAAGAGGTTCATTCTTTCATGCCTTTAAATTTCaatcaggtgttttttttcctttacatatCAATAAGAAATCATTTACTTTAACATGTATAGTTCAGGTACAGCTGTTTCAGTTGCCTGAATAGAAGAGCTGCTACTGAAGTATAAAAAAGTTTTGGTCCTTACACTCTCTTATAAAAGGTGGGACTTTGTGTAGAAAAAGTTCCACTGCCTTTAATGCCAAAGCAATAATACACAAGGAAAGGACCTGACTCCATTTGCCTGCATGTAATTGGGGTAAGGAACTGGCATTACTTGTATTAATAGGATTTTAATCTTGTTCTATTTTGTTGCTGGAGTTTTTAACAGTGTTATGAAATATTTCAGCCCAAAACACTCCTGGCTGATTTCACAGACATTGGTTAGCATAGTCTTGGCCTATGCCATGTTATTTTAGATACTCAAGATTAGTGCTAACTGGGGTCTGTGAATCAGGCCGGTCGTCTCTTGGCTGATTATGACCAGAGCCCGAGTCTCTGAGGTacttcagtgtttgtgtgaaattgggatttgtttttaaagggcaAGGAGGTTCTTCTCAAAACTGTATTTcagaatttaatttgttgtcCAACAAAATCCTCAACAGTAATCAAGCTGTATAGTGGAAGAGTTCATCATTCTATCTTGAAGATTAAGATTTAAAAGCAGTATAGAGTGGAAGTCTTAATCTTATTGACAAattgatctttttttattttagtttgagaTTTTATCAAAGTAGTAACTCGGAATGTTGTTTTGCCATGTTTTAGGGTCTATATTTcacaaatgtggaaaaattgaataaagcatattttaaacacacaaggGTAATCCATC

Function

symbol description
mfsd1 Predicted to enable protein homodimerization activity. Predicted to be involved in protein localization to lysosome and protein stabilization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosome. Orthologous to human MFSD1 (major facilitator superfamily domain containing 1).

NR:

description
PREDICTED: major facilitator superfamily domain-containing protein 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018241 True 2634 mRNA 0.48 13 5271199 5278925

Neighbor

gene id symbol gene type direction distance location
AMCG00018244 nme3 coding upstream 37842 5227386 ~ 5233357 (+)
AMCG00018243 spsb3,LOC101158278,LOC106600674 coding upstream 48714 5213135 ~ 5222485 (+)
AMCG00018242 atp6v0c,LOC107552490,LOC106516477,LOC106517404,LOC107376678 coding upstream 66335 5193217 ~ 5204864 (+)
AMCG00018236 NA coding upstream 88136 5171502 ~ 5183063 (+)
AMCG00018238 LOC101065496,LOC101160359,LOC106579193,LOC107556665 coding upstream 176507 5076119 ~ 5094692 (+)
AMCG00018249 NA coding downstream 7461 5286386 ~ 5304453 (+)
AMCG00018254 LOC108274084,LOC107090247 coding downstream 102126 5381051 ~ 5392482 (+)
AMCG00018255 LOC106933195,LOC107091042,LOC103143274,LOC106958689,LOC108237146,LOC107388092,LOC103481993 coding downstream 248361 5527286 ~ 5528572 (+)
AMCG00018257 LOC108274018,LOC108413479,LOC107602438,LOC108437874,LOC107719913 coding downstream 312922 5591847 ~ 5604149 (+)
AMCG00018256 LOC101067528 coding downstream 344120 5623045 ~ 5633788 (+)
G115099 NA non-coding upstream 170261 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 456780 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 677354 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 681125 4589295 ~ 4590074 (+)
G114940 NA non-coding upstream 884310 4386180 ~ 4386889 (+)
G115188 NA non-coding downstream 37528 5316453 ~ 5317925 (+)
G115201 NA non-coding downstream 65562 5344487 ~ 5344947 (+)
G115331 LOC100136012 non-coding downstream 767105 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 1246794 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 1339253 6618178 ~ 6620097 (+)
G115049 NA other upstream 507294 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 667094 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1077869 4186410 ~ 4193330 (+)
G114551 NA other upstream 2623425 2640846 ~ 2647774 (+)
G114518 NA other upstream 2702261 2491313 ~ 2568938 (+)
G115299 NA other downstream 670538 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 876563 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1431557 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2614702 7893627 ~ 7894449 (+)
G115648 NA other downstream 2840853 8119778 ~ 8122171 (+)

Expression


Co-expression Network