AMCG00018242 (atp6v0c,LOC107552490,LOC106516477,LOC106517404,LOC107376678)


Basic Information

Item Value
gene id AMCG00018242
gene name atp6v0c,LOC107552490,LOC106516477,LOC106517404,LOC107376678
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5193217 ~ 5204864 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018242
GAGCAGTCCACGTCCCCATCCCCCCCTACGAAAGCCCAGTGGTGCGCGTCCAGATGGCCGGTCAGGTGATCTTTTCCGCGTCGCCATTTTGTGCTGCTGCGCCGGTATTTATCAGAGAGGAGACGGAGACTCGccgctcacacacacagctgctgtACAGCCTGCGCGGTCCTTTCCACTCCTAGcctgtagttttttttgttttgctctcgACAAAGGAGACCCGTGACCCAGCGAACactatcattttttatttttttgtatttccttcggtgttttttttttattttacgctGTTTGAGAAGCCATGTCGTCCACCGCAGCCAGCCCCGAGTACTCCTCCTTCTTCGCCGTGATGGGTGCCTCTGCGGCCATGGTGTTTAGCGcTTTGGGAGCCGCGTATGGCACAGCGAAGAGCGGGACCGGCATCGCAGCCATGTCTGTCATGAGGCCCGAACTCATCATGAAGTCCATCATCCCTGTAGTCATGGCGGGTATCATAGCCATCTACGGCCTGGTGGTAGCAGTGCTGATTGCCAACTCCCTCTCAGAAACTGTCACGCTCTACAAGAGCTTCCTCCAACTGGGGGCGGGCCTGAGCGTGGGTCTCAGCGGCCTGGCGGCCGGCTTTGCCATCGGCATCGTGGGGGACGCCGGCGTGAGGGGCACAGCGCAGCAGCCCAGGTTATTCGTGGGCATGATCCTCATCCTCATTTTTGCTGAAGTCTTGGGGCTCTACGGGCTCATCGTTGCCCTAATCCTGTCCACAAAATAAACGTCCAGACCTGCTGCTAAATggaggaagaaggaaaaaaaaaaaagaaaacggcTCCTTAATTATTCTGGTCTTATCTCCACCATGTGTACAGTTGTCTCAATTTGGTAGTCAACCTCTTGTAAATGCGCAATGTACGTTAGTGATTtgtctgtcctgtgtgtgtttagatatgcatttattttactttttttttttttttttcttccaggttAGTCGGTCATCCGTTTTCCTATTTTCTTGGGAGAACTGACTTAAAGACTAACCTTTTGGGACAGTTTCCAATTTCCATATTGATGTTGAGGAATTAACTGTACAAATatggaatagttttgtttttcactgattttatttatgaatttttGAAATGTTCATAAAGCTGTTTAAATGGAGCAAAAGTCTTTATTGAATTCcccatgatatatatatattataaatatatctatgtATAGTTAGAATATTGCACAGTGGGTAATTGTCATAAGTGCTTGGAATTCCTCTGGATGTAATAATTGGTTAAAAGGAGATTGCCTTTAGTGTCCTGATATGGAGTGGgagttctgtgtgtgttttaatctaATGCTGACATTCTCGAAACACTTGTAACATGTTTTCCTGTAGTACAGCTGTTTGATTGCATTTAAGGTGTACCCACTGATGGGTTTCACAGGTCTAATTTCCAAATAAATTTCCTCAACTTACCACACCTCCtgattttattgcatttaaaaatgacccATAAAGAATGGCAGAAATGGAATgcactgtgtttttattctctctccACATTCATGCTTCTCGGCTTGCAAGTCAGCGGTGTTTTCACAAGCCGTTGCCCCAGCTCTGCCTTCGGCGTCGTTTTGCATCCTGAGTAACTGTCCGCGTAGATGTTTTATTGCGTATGCTCGATGGAAGTCCTGACTCTTCTCTCGCGCGTCTGTTGCCTTCCTTCAGTCTGCCAGTCTAGCGAGAAACCCCTTTTGGTAAGAAATCTTTTTGTGATGGTTTCTGACGGCAAAGTGTTCTTTTCACCGTCCTTTGGATGTATATTTGTGCAAAATAACGTTCCTGATTTTCATTGACCCAGTATTTTGACAGTGTAAAGCATTTTTGCATCAAGTTTTAAAAACCTAACTGGGTCTAAAGTTGTGGGATATTTGCAAGTGCATGTTTTGAAAGATGTAAAAAGCTACATTCAACTACTGTAAAGTGAACTTCAGATGTTTCTCGCTGTCCAATTGTAGTGTAGCCCCCTGCAGtattaaatagttttgttattttcatgcTTAACTGCTTCTAGTCTAATcttgaatatattttcatgaacTGTGGTCAATAAAACTGTAGGATTAGTTACCTGTAAAACTTTTGAAAACTGATCTTTTAACACCCTGCTTCACTGAATCTGAGAGAGAAATTAACATATTGGTTACTTGCTAATTATAATATTCCATGTGTTGGATGCAGTCTCTATTCTTCCTGTGTGAAGGTGAACAAACCCTGTTATTCAGGTCACCAAGaatgtatcatttaaaataaggaattaacctgaaaattacaaataaatgtaactggGTGTATTTCCCCTGTCAGTTTTCATAACTGATTTGTGGCTGCTACTGTTACACTAATCTGTAATCCAATTGGTGAATTAGATGCGTACACAGGGTTTGTCACCACTATGTGGAAACCATTTGTTAATAATTTGATGGGGAAATATTGGCTAATAAAAATACTCCTGTCAGCTCGATGCTA

Function

symbol description
atp6v0c Enables ubiquitin protein ligase binding activity. Involved in positive regulation of Wnt signaling pathway. Located in extracellular exosome; focal adhesion; and lysosomal membrane. Implicated in thyroid gland carcinoma.

NR:

description
PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like

GO:

id name namespace
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018242 True 2530 mRNA 0.42 3 5193217 5204864

Neighbor

gene id symbol gene type direction distance location
AMCG00018236 NA coding upstream 10154 5171502 ~ 5183063 (+)
AMCG00018238 LOC101065496,LOC101160359,LOC106579193,LOC107556665 coding upstream 98525 5076119 ~ 5094692 (+)
AMCG00018237 LOC102777150,LOC102206336,LOC101478571,LOC100698643,LOC101065496 coding upstream 133796 5058378 ~ 5059421 (+)
AMCG00018234 LOC106579194,LOC106578326,LOC105031632,LOC103369159 coding upstream 169990 5022592 ~ 5023227 (+)
AMCG00018235 NA coding upstream 199049 4972950 ~ 4994168 (+)
AMCG00018243 spsb3,LOC101158278,LOC106600674 coding downstream 8271 5213135 ~ 5222485 (+)
AMCG00018244 nme3 coding downstream 22522 5227386 ~ 5233357 (+)
AMCG00018241 mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909 coding downstream 66335 5271199 ~ 5278925 (+)
AMCG00018249 NA coding downstream 81522 5286386 ~ 5304453 (+)
AMCG00018254 LOC108274084,LOC107090247 coding downstream 176187 5381051 ~ 5392482 (+)
G115099 NA non-coding upstream 92279 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 378798 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 599372 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 603143 4589295 ~ 4590074 (+)
G114940 NA non-coding upstream 806328 4386180 ~ 4386889 (+)
G115188 NA non-coding downstream 111589 5316453 ~ 5317925 (+)
G115201 NA non-coding downstream 139623 5344487 ~ 5344947 (+)
G115331 LOC100136012 non-coding downstream 841166 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 1320855 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 1413314 6618178 ~ 6620097 (+)
G115049 NA other upstream 429312 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 589112 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 999887 4186410 ~ 4193330 (+)
G114551 NA other upstream 2545443 2640846 ~ 2647774 (+)
G114518 NA other upstream 2624279 2491313 ~ 2568938 (+)
G115299 NA other downstream 744599 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 950624 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1505618 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2688763 7893627 ~ 7894449 (+)
G115648 NA other downstream 2914914 8119778 ~ 8122171 (+)

Expression


Co-expression Network