AMCG00018243 (spsb3,LOC101158278,LOC106600674)


Basic Information

Item Value
gene id AMCG00018243
gene name spsb3,LOC101158278,LOC106600674
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5213135 ~ 5222485 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018243
TGAAAAGTAGGTCAGAGAGTGACGGGCAGCCAGCGGAGCGCCGAGACGGGCATGCCCAAGAAATAACTCCCCAAACAAGAGTCAAACCAGCGGGGCAGCGAGCAGCTCAACCCGGAGAAAAGGCGACGCGCAAAGGGAAAGCAAGCTGTTGTTCAGGCCCGCACAGCTGCCGGACATGTCCAGGCGGAACAGGAACAGCCGAGCGTGGCGCTACGTCTGGAGTGGGATCCGGCGGGACGCTGACGCCCGGGCGCTGGTGCTGGCATCCGAGAGCGAGGAGTGGGGGTACGAGCGGCTGCAGtacAGCGACTCCGACTCCGAGCCGGAGTTCCCCACCATCACCCCCGCGGTGCCCAGCGCCGTGCCGGTGACTGGGGAGTCCTACTGCGGCTGCGACTCCCAGGCCGAGCCCGCCTACAACCCCCGGCTGCGGAGCTTCCACCGCGTCAAGGATTGCCACTGTGGCGAGGACGACCAGGACTTTGACTGGGTGTGGGACGACGGCCACAAGTCCACCGCCACGCTGCTCAGCTGCGAGAACCGCAAAGTGAACTTCCACATGGAGTACAGCTGCGGCACCGCAGCCATCCGGGGCACCAAGGAGCTGGCCGAGGGGCAGCACTTCTGGGAGATCAAAATGACTTCCCCGGTGTACGGCACAGACATGATGGTTGGAATCGGCACATCTGACGTGAACCTGGACAAGTACAGACACACCTTCTGCAGCCTCCTGGGGAAGGACGAGGACAGCTGGGGCCTGTCCTACACAGGGTTACTCCATCACAAGGGGGACAAGATCAACTTCTCTTCACGGTTCGGCCAGGGCTCCATCATCGGGGTCCACCTGGACACCTGGCACGGCACGCTTACCTTCTTCAAAAATCGCAAGTGTATAGGTGTCGCCGCCACAGAGCTGCAGAACAAGAAGTTCTACCCCATGGTCTGCTCCACGGCGGCCAAGAGCAGCATGAAGGTGATCCGCTCCTGCTTCGCACCCACCTCCCTGCAGTACCTGTGCTGCGCCCGGCTGCGCCAGCTCATGCCCGACTGCGTGGACACTCTGGGCGTGCTGCCCCTGCCCCCGGGCCTGCGCCACCTGCTGCACAACAAGCTGGGCTGGGTGCTCAGCCTGAACAACGGGGCCACAGACGGCGCCGACCGCCCCCCCggctcccccaccccctcggGCTCATCCGCCTCGCCCCCGTCCTCGGGCAGCGACTCCGAGGGATGCTCCTCCGACCCCGAGGCCTGCCAGAGGAAGCGCTGCCGCTGGACGTGAGCCCCGAGGGGGAGCCACGCAGACTTGTACAGAGACGCGAAGCAGCggcagaagaagaaaagaaacgcAGGAGGCGGGAGCCAGGATAAAACTGAGCCCAACATCGGTGCCAGCCCTGGCCTAGACACGCTccagccttttttattttctttttctccatatatacatatatatatatatatatatatatatataaattatatttccttttttgaaatatAGACCTGCTCCTGCTCCACTCCCAAGTCTTCATTTTACAGACTTCCACACAATCTTCAAAACGGCGGGGGGCTTCATGACTCGGTGAAGGACGCCAGTGCAGTGGCGTGGGACAGATTCACGTCCGAGGACCACATCCCATAACCACACCACTGCCAACACCGTGGCACCGACAGAGAGGACCGTGTGTCCCCGGTGTTTTTCGTCCATTACCAATGCTAGGGTTTAGGTTGGAGCTGATGAGCAGCGTTCTGTCCGCTCGCTAGGGGTTTGTTTTGCGAAAACCCATCACCGCATCCATCTCTGTCGACGGTCGACGATGGATCCTCGTTCCTTCGCTGTATGACGTGACCTCAAGTACTGTAGCACTCGAACCCGCTACGCCGTATGTCCGTTGTCTTTGCTTTGGCCCTGTGTTTTCAGCCGGCGCGTCCCTGTTACACTCGTACTGTAGGGGCAGGTCTCGTTCCTGAGCCAAATCGATTTCAGGTCTTTCTACAGAAGTGATGACGGGACGTTTGTGTAAATAATTTTAGCAGAGACGCTTACGGAAAGTGCTGGATTTCTGGATGCTTCCGAGCAGATCTCCCAGGGGTCGGAGGTTGTCCGTGGcttttgtgtgaattctgaTCGGAGCGCGTCCACATtctctacattttaatttattttttatttgttggtgCGACATTTAAAAGGACGAGGTTTGCTGATACTTGAAACCAAGTACCCATGCATTCTAGTTATCAGATGTTACAGCCCCTTAGTGAAAAACAATCTCATCTCCTTTACACCAAATGCAACCAAACAGCCCGTGTCTCTCGGGTCAAGCGGCTATTTTAAAAACCGTGCTTTGCTTCTGGCCCCGCTCATACCATGACAGTGATGAACGTAAGAGAGGACCTCCCGACTGTACAGGGGGCTCAAGCAGTGATTCCTCCGCTCAGGGGACATGCACGTAAAGGATGTGTTTTCCCAAGACGTGCATTAGTTAGCCAGGCAATAGAGAAGGGAGATGCGATCTTAAATGCTCCTGTTTGCTCAGTATGTACTCCAAAGCAGAACTTCTTCCCACTTTGGGAGTAGATTGAACCGATCGCTGTGTGGGAACCGCTGGCGTAGTAAACCggttgttttataattttattgttatatcCTCTCGTTACGGTTATTAAACGCCACCAAGTGTGTCCCCAACCGGAGGGGAAAGCACCGCTCTGAAAGCTGATATCCCAGCGGTTACAGGGACGGGTGTCCATCTATCCCAGCAGGCCTAAAGCACCGTCCTGGTGTCCCGGCACACTACTGTCCCCACACAGCAGCGGAGTGCCATTACCGGCCGATGGGGACAGCTGGCACCATGTCAGAGGGGTCTCGAGCCACGGCCCCATTCTCTTAACTGAAAGGTGCATTGTAATCCTCTTATTATTCTTAATACTATTCGTATATCTATGATTATTAATGTTATCCTATATATCTGCCACTTTGGTAGGGTAACTTTCAGTAACatgctttaatttaaagttatataatacatttttattattaatcatgaTTGTTTTCGCGGTGTCTTCACAGGGGGGTTCTGTTACCTGTGGCCGGCGTTGTCTGCCACGcatttaaatcagatttaaGTGCTGGATCACAGATTTTAATATAGTCGTCTGGCCGCATTTCAAAAACATGGCCAGTCAGAGCTaggatgttttgtttctgttttctgggggtggtggtgggacAGGGAGGCATTTAGGAAGAGgagtgtctttaaaaaaaacttttctatttctttttaaagtctTTTTTTATGCATTGAGGCACTTTTTTTGCATATATACTCTGTACAGACTGTATGTATTagtcacttttgtttttctcccctcccccaTGTCGTTTGTACCTGGAAGCATGATACTTCATTAGAAACTAAAAAGCAAAGTGtaaaacgagaccagctgtaAAGGCTTCCGTTCGTTTTTGTAATAAAGAGTGAGAGGCAGCGA

Function

symbol description
spsb3 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of SCF ubiquitin ligase complex.

NR:

description
SPRY domain-containing SOCS box protein 3-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10345 SPSB3, SSB3; SPRY domain-containing SOCS box protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018243 True 3501 mRNA 0.53 7 5213135 5222485

Neighbor

gene id symbol gene type direction distance location
AMCG00018242 atp6v0c,LOC107552490,LOC106516477,LOC106517404,LOC107376678 coding upstream 8271 5193217 ~ 5204864 (+)
AMCG00018236 NA coding upstream 30072 5171502 ~ 5183063 (+)
AMCG00018238 LOC101065496,LOC101160359,LOC106579193,LOC107556665 coding upstream 118443 5076119 ~ 5094692 (+)
AMCG00018237 LOC102777150,LOC102206336,LOC101478571,LOC100698643,LOC101065496 coding upstream 153714 5058378 ~ 5059421 (+)
AMCG00018234 LOC106579194,LOC106578326,LOC105031632,LOC103369159 coding upstream 189908 5022592 ~ 5023227 (+)
AMCG00018244 nme3 coding downstream 4901 5227386 ~ 5233357 (+)
AMCG00018241 mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909 coding downstream 48714 5271199 ~ 5278925 (+)
AMCG00018249 NA coding downstream 63901 5286386 ~ 5304453 (+)
AMCG00018254 LOC108274084,LOC107090247 coding downstream 158566 5381051 ~ 5392482 (+)
AMCG00018255 LOC106933195,LOC107091042,LOC103143274,LOC106958689,LOC108237146,LOC107388092,LOC103481993 coding downstream 304801 5527286 ~ 5528572 (+)
G115099 NA non-coding upstream 112197 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 398716 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 619290 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 623061 4589295 ~ 4590074 (+)
G114940 NA non-coding upstream 826246 4386180 ~ 4386889 (+)
G115188 NA non-coding downstream 93968 5316453 ~ 5317925 (+)
G115201 NA non-coding downstream 122002 5344487 ~ 5344947 (+)
G115331 LOC100136012 non-coding downstream 823545 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 1303234 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 1395693 6618178 ~ 6620097 (+)
G115049 NA other upstream 449230 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 609030 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1019805 4186410 ~ 4193330 (+)
G114551 NA other upstream 2565361 2640846 ~ 2647774 (+)
G114518 NA other upstream 2644197 2491313 ~ 2568938 (+)
G115299 NA other downstream 726978 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 933003 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1487997 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2671142 7893627 ~ 7894449 (+)
G115648 NA other downstream 2897293 8119778 ~ 8122171 (+)

Expression


Co-expression Network