AMCG00018245


Basic Information

Item Value
gene id AMCG00018245
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5279354 ~ 5283933 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018245
TTGTTCCTGCGTTTCCTTCGGCGTCTGCGGTTGGGTTTGGAAGAAAACGCGAGAAAGAAAGCATGACTTCTACCAATATGTTCCAGGGGCTGGAGAGCAGCGGCAAGCCGAGCTCCAGGGTCCTCAGACCCCCAGGAGGAGGGTCCAGTAACCTGTTTGGAGCCGGAGAGGAAACCTCCAGTCAAAACAAAACGCACCAGATGTCCTCAAATATTTTTGGACCTCCAGACGAACCACAGAGTGGGCCGAAGAGGACAAATCCACCAGGTGGGAAGAGCAGCGGCATCTTCGGCGACTCGGACTCCAGCGACTCTTCCCAGCAGTGGCACGTCCCTCCGGGCGGGAAGTCCAGCAACATATTCGGGGATGCGGTTAGCGATCCAGCAGTGCGCAGCCACCCCAACAAACCAAAGGACACCAACATCTTTGCCgatggaaatgtaaataaagagcCTAAAGCTCCCCAGCAGAAGACCGAGTGCCCAGAGGTGAAAGAGAACGAGAAGGAAAACAAGGAGAAAGCGAACcaggaaaaggagaaggaaaaagaGGTGGCagtggagaaggagaaagaaaaggagaagcCAGCCGCCCCTAAAGAGGACGCGGGCCCTCAGGCCACGAAGGACGACCACGAGCCCCGTCTGGGCCCTCGCCCGCGTTCCCACAACAAGGTCATCCACCCCCCCGGGGGCAAGTCCAGCGTGTCCTTCTACTGACGCCCCCCGCTGTCTGCGTCTCCTGCACTTTCCCCTGTCCCTCTTCTGTCCGTAGAGAGAGGAGCCGTTGTAGTTGTTTACCGGCCGGTTTCCTACTGTTGTCTGTAGCATGGTTGTCATGCTgctttgtttatgtgtgtttggaGCTGCTAGAACCCATGATTGGAGCTGGGCTGAACAATGGCAATCAAATGGCGGGTGGCGAGGTCTGCCTCGATTTTAATGCTTTGGGTTAAACGGAGAATTAGTCTCGATCGCGTGTACATTTTGATTCATGTGGGTTCATTTAAAACTGGGTCTCCGTCGTGCACTGTGGAGGTCTGTCATGGGTGAAATAGGGGACAGAATATGCAGGCTGAACCGGGCTTCTGCCAGCTGAAGTAATTGATCACTGATAAGTTGGTCTGGGCAAGGTCAGCACGATTTGAAGTGTCCTCTTGATTTTCAATGCAAGTCCTCCGCAGTGTGTGGATGAACACGGGTCACATTGAGTCTTCGGACAGGCTTCATGCTGTGCCCCAAGTCTTCAATAAGATCTTTTCTGTacctcctctccccccccccattgcAAACAATGCAACTGACCTCCTGAGAGATGAAACTGTTCCATCTCACAGGTAGGGCAGCAGCGCTCAAGTATAATCACAAAGCTCTCCAATCTGTTTCCTGTCCTCTATCCTGTCATCTCCCATCCTGTGTTCTACTCTGTAATCTGtcttaaacattaaattaattaagaagaAACGTTgaaattgcagcatcgcaaaATGAATGGACAAACCCTCTCCAAAAAGtactttataattttttttattttatgtataaatactAATATGACACGCAGTGGCTTCTGTTTTACCATTGCTGGTTCTGCGAAGAATGTGGTGTCAGAACTCAGAAGGgcgttttatgttttaaattaaaacttaaagaCAATGTGAACACttagtaaaaatgaaaacaatcgAAGTAACCAAACGAGACTGAGCGATTTCCTCACGATGGGGGGGATCGCACTGTGTGTCAGAGTTCCCTGTGCGTTTAAGCCTGCCGAACGCGGGCCCTTACTTTGTGTGCCTTCCTCCGTACAAATGTGCCTGGCTGGCAATGTGTAGAACAGAAAAACCTGTGGAAAAATGTGCATTACAATAAACTGTTGTATTTTGATAAA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018245 True 1890 mRNA 0.50 5 5279354 5283933

Neighbor

gene id symbol gene type direction distance location
AMCG00018247 NA coding downstream 9949 5233620 ~ 5269405 (-)
AMCG00018248 NA coding downstream 53679 5222887 ~ 5225675 (-)
AMCG00018246 nubp2,LOC102775692 coding downstream 66999 5206383 ~ 5212355 (-)
AMCG00018240 NA coding downstream 107835 5155372 ~ 5171519 (-)
AMCG00018239 NA coding downstream 124180 5149900 ~ 5155174 (-)
AMCG00018253 NA coding upstream 27224 5311157 ~ 5322315 (-)
AMCG00018252 dhrs7b coding upstream 48308 5332241 ~ 5342984 (-)
AMCG00018250 tmem11,LOC106600685 coding upstream 65705 5349638 ~ 5354923 (-)
AMCG00018258 NA coding upstream 324657 5608590 ~ 5612475 (-)
AMCG00018262 cops3 coding upstream 457096 5741029 ~ 5745704 (-)
G115170 NA non-coding downstream 58 5279086 ~ 5279296 (-)
G115157 NA non-coding downstream 36167 5227980 ~ 5243187 (-)
G115160 NA non-coding downstream 45937 5231618 ~ 5233417 (-)
G115144 NA non-coding downstream 75481 5153052 ~ 5203873 (-)
G115100 NA non-coding downstream 220768 5036731 ~ 5058586 (-)
G115172 NA non-coding upstream 141 5284074 ~ 5284333 (-)
G115173 NA non-coding upstream 1012 5284945 ~ 5285516 (-)
G115176 NA non-coding upstream 8090 5292023 ~ 5292259 (-)
G115177 NA non-coding upstream 9746 5293679 ~ 5293933 (-)
G115179 NA non-coding upstream 12981 5296914 ~ 5297182 (-)
AMCG00018220 NA other downstream 627713 4646147 ~ 4651641 (-)
G115020 NA other downstream 691057 4586062 ~ 4588297 (-)
G114838 NA other downstream 1192323 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2631543 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2669875 2609145 ~ 2609479 (-)
G115174 NA other upstream 2453 5286386 ~ 5287873 (-)
G115183 NA other upstream 16174 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 72913 5356846 ~ 5366754 (-)
G115320 NA other upstream 666488 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1326700 6610633 ~ 6652773 (-)

Expression


Co-expression Network