AMCG00018249


Basic Information

Item Value
gene id AMCG00018249
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5286386 ~ 5304453 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018249
CGTACAGTGAGGGGAAGATCTGTTGCAGCGGCGCAGCTTTCATTTCGGCGTAAAAGTGCACGAAACCGGCCGGTCGCACCTTCTTGCACCCGGGCTGGATAGATAGCTGAAACCGTGGGGGTCAAGGTGGTTTTTATTCGGTGTCCGGGGGGCTTTCTGATCCGAAGTTATCAGCCGACGGAGCAGCGAGTTTGGGAAGAGAGTGGAGCTGTTTTCTAGTGGAGCCGCGGCGAGTTCCAGCCCCAGAGAAAAGGCGAGAGCGAAGGGAGACCGTCGCAGGCAAAGCCCTGATCTCGCCTTGAATATGCACCATTTAACCCGCTGTTTTACTCCAAAAACCTCGGATCCAtggtgaggagaaagaagataCCGTCCGCCCTCGAAGACCACCAAAATGGGATGACAGTGAAGCCCGGGGACGGCAGCGGGGATGAAGGGGCGAAGAAAGCGGGCAGAAAGCTGGAAGGCGGCGAGGAAGAGGAGAGCGCAGAGCCGGGGAGCGACGAGAGCAATACAAAGAGAGACGGGGAGGAAGATCTCCATCCATCATCTGCGGGTCCATGCAGGTCGGCACCGGTacctgcctcctcctcctcctccgccccGGGTCCGGACCTGCACCCCCAGAACCAGGACCAGCATCACTTCCTCAGGTCCAGCGTCCGACCGCCCAGCAAACGCCTGAGGAAGGAGTCCCTCGCCTCTGCCGTGAATGGGCACAGCGGGGCCAAGGGGAAAGGAGCTGAGAATGGCGCGGCTGTGCTGGTGGGGTGCGGCCCCTCGGGGTCCCCTGTGAGCTCAGGCAATGCCACCTCCAAAACGGCCCCTCGCAGCCTGGGGCCCAGCGACAAAGAGGAGGGGAGCCAGAAAAAGGCTCGGCGCCAGTGGGAGTCCTGGAGCGCGGAGGATAAGAACTCCTTCTTCGAGGGGCTCTACGAGCACGGCAAGGATTTCGAAGCCATCCAGAACAACATTGCACTAAAGTACAAGAAGAAGGGCAAGCCAGCCAGCATGGTGAAGAACAAGGAACAAGTCCGCCACTTCTACTACCGCACCTGGCACAAGATCTCCAAGTACATCGACTTCACAAACGTTTACTCCCGAGGACTGAAGAAGTCTTCCCAGGAACTTTATGGACTAATCTGCTATGCAGAGCTGAGGAAAAAGGTTGGAGGCTGTATGGATGATAAAAATGCTGCCAAACTCAATGAGCTCATTCAGCATGGGGCGACTACAGTGCGATCCAAAGGGAGAAACCTGCGCATCAAGGCGCCCATGTGCCGGGCACTGAAGAAGCTGTGCGATCCCGACGGGGTCAGTGACGAGGAGGACCAGAAACCGGTCCGGCTGCCCCTGAAGGTGCCCGTGGAGCTGCAGCCCCGCAGTAACCATTCCTGGGCACGGGTGCAGAGCCTGGCACACAACCCACGCCTGAGGATGGTCGTGGAGCTGCACAGGAAAGTGTCCAGCCTGATCGAATTTCTCAAGCAGAAGTGGGCCGTCCAGGATCACCGCATCCGGAAGAGCCTGGAGGAGCGGCAGGCGCTGGACGGGCCCCAGTGCTCGCCTTCGGGTGAGGCGAGGGAGGAGCTGTTCTTGTACCCTTCAGAGAGCAGCACCCTGACTGCTCTGCCCGGTGTGGCCCGCGTCGTCCACTCCAAGGCTTTCTGCACCGTCCATTGGCTGGAGAGCGGCAAGTGCCGGCCCGGTACCAAGGAGCTTCCTCCTGCCCAGATGCTGGGCATCCAGACGGCCCACCGAGGCACGGGGCGTCAGGGGCGCACAGAGCGGCTGGGGGAGCCTGCAGACGTGGCGATGGACACTGAAGAGCATCCCATGTCGGAGCCCTTCCCCGCTGCTGAGGGGCCCGGCCTGGACCTGGTCATTCCAGGGGATTGTATCTGCCCCATGGAGCACTTATCGCCTAGGAAGGCCCAGATGGATGCTTTAGGGGATGGCGTGGCGGCGGTGCCCATGACCTGCGGGGACGAGAGGGGCGTGGTGGCCATGCCTCTGGAGCCCGGGCCCCCAGAGGGAGCTGTCCCCATGGAGCCTGCGCCAGGGGAGGTTTGCACTAAGGAGGACGAGGCGGCCGAGGCGGGCAGCCCGGAGGCGCGGGTCGCGAAGGAGGACGGCGGGAGGCCACCCCGGCAGATCCGGGAGGAGGGCTGGAGCACACGCAGCACCGAGAACGTCACGCTGGCCGAGCTCTACCTCATGCTGGGCAAGCCGGACAAGCTGCAGCTGGAGTACGAGTGGCTGCCCGTGTCCAAGGAGGACGGCCGGCCGCACGCCAACCCCCACGGCCATAATACCCACCGCGTGCTGCGCTGTCTGCTCAGGCTTGTCTCCTCCGAGGTCAACCCCAAACCGGCTCCGGAGTTGTGCTCCACTGCTACGTCTCCCATCAAGTCCTTCCCGGAGGACCAGTCCCTCACGCCCCCAGGGAAGATCCTGTCGGTGGGGGTGCGCAGTCCGAGCTGCGGCCGGAGCCAGGCGGCCACGCGGGGGGGCaagctgctctctcccacagcCAGCTCCCAGGGTGTGCGCAACCTGCCCCGCTCGCTGATTATCCCGGGGGTGGGCGGCTCGGGTCCCGGGGAGACCGACAGCGGTCTGTTTGCCATCCCCACCACGCTGCCGCCCAACAGCCGCCACGGCAAGATGTTCTCCCCCAACAAGGAGGCCGAGCTGGCCTTCAGACAGCAGCTGGACTCCATCAGTATGCAGTCGGACATCTTTCTTCCCAAGCAGCGGAAATTCAGGAACCGCCATCTCCGCAAGCCGCTGGTGGTGCAGAGGACGCTGCTGCCCCGGACAGCAGGAGACGCCTCCCAGCACGTCTGCTCCTTCTCCATCTTGTCCAACTCCTCCGTGGCCGGTAATGCCCCGCCTCCCCCTCTAGCCGTCGCACACCGTAAGAGTCGGACGCTGGTTTTCCTGTCAGTAAACCACAAAACGCCAGCGCTGCCAATGCACAGGAGCCCGAGTCGTGTCTCGTCTGGCTTCCGATGGCGCAGTCGGTTTGTTGAGAATAACGAAAGGACCGGCTCCTTTCGGCCCATTCAGTCGCCCCTGTCCGCCGCAACCGGCTCCCGCCCCATCATCTCCAAAGTCATTCCCTCCTCGAACTCCAGCCAGCTCTCCAGTACGATCGATTTAGCCGCCAAGTCCGCGGGCATCATTCCGGGCAGCCCTGCGCGGGTCATGGAGGCCCCCAGTCCTGGCCCGCTGACTGAGAGCAGCGTGATGTCTCCAGACCCGGTGCCCATGTCCGCGGACAAGGAGATCCTCGACCAAAACACAGACGGCATGAGCCCCCCTGAGGCCCTGCTGAGGAACGGAGCCCCGCCCTCTCCGTCCGAAACACCTGCCTCCCTCCTGTCCCCACCCAACATGTCCTCACTGCTGGACATCTCCCTGCCGGGGCCTCCCGAGGAGGTGCTGTCGCAGGGGGAGCAGGCCACTCAGATCAGCGACTCCATCATTGAGCTGGCCATCAACTCTGCGCACTACGGCGACGGCTCCTCCCTGTCCCCCGCCAAGCTGAACGGCAGCGACAGCTCCAAGAGCCTGCCCTCCCCGGCCAGCAGCCCCCAGCGCAACTGGATCGCCTCGCCCACTCACGACCCGCAGTGGTACCCCAGCGACTCCACGGACTCCTCCCTCGGCTGCCTGCTGTCGAGCCTCATCTCACCGGAGAAGGGCAGGAAGATGCTGCTCACGTCCACGGGCCCCTCCAGCGGGACCTCCCTGCTGGGCCCCAGCCTCCTGGACGGCAGCTCTCGGGACTCCTTCGCCTCGCGGTCCCTGGCGGACGTGGGAGAGGTCGACTCGCAGCTGGTGTGCATGATGAGCGAGAACAGCGTGGATTACATCGCCCGCTTCAACGACCTGGCACAGGAGCTCTCAGTCACCGAGCCGCCGCCACCacccccccctgccccctcGTCCCAGGGCGGCCCCGGCTGAGCACAGGGCCGCCGGGGAGCCGCTCTTCCCCTCGGGGGATCGCTGCACAGGGGGCCATGGACTCGGGCGCCCGTCTGACCGCAGCGCAGGGACCGCAGGAGTGTGCGACGCAAACCGTTTGACCGAATGTGCAATAGATAGAGCCCAGCTGTAGGAAGCCAGAGCTTGGCAGCTCCGAGCCGGGCGGGGAGACCGGGTCGCTCGCAGGCCTGACGCACGGACCCTTCTGGCTCTGGTGGGGGTATATTTGAAGAGTGCCGTGCAACCCCGTCCTGACGCGCGAGAAGTTGCCGCCGCTCTCTTCTTCCCAAACAGGCGAGATCATGACGCCTGACCGGCCACCAGTCCTTCGCCCGCCACCTCCTCCACGCGCTTTTATCAcactgaacaaagaaaacaaaactgttaaaacgCCTCCGTCTCAAAGACTGGCATCTCCGCAgaaatcatttaatttcaaactttttttatttatttaaaagaatgtcACATTTCCATTCGCCTCATCAACAAACCCGCCCGCTCTGTGGCTGGGACTGAATCAGCGAGCGATGCCGTTCTGTTCGATTATTATAGAGATCACCGTCATGGCAGTAGGTTTCCATGTTGCGGCGGCCTGGttactgcagttttatttatgaagagtTTAAGTAAAAAAGGTGAACTGGGTTTTTGCTTTTACCTCCGTTGAAGATTCGGATGATGGCGTGTGATTGCTACCAAAACTAGTTAGTCCCTTATTACACTTCTAGTCTGTCCGGTTGTAGTAAAGCGATCCCAACCTCCGCTTATAAATAGTTTGCTATTTTACGACCAAGACTCCAGTCTTCAGTCCGTGTTCAGGATGTTCAGAAGCCGAGCACATCGGGCCTTTGAAAGCAGTGCCTTGCTTCCTTTTTCAACGGAGATTTTAAATGCGATTGACTTTGACATCGGCGCAACCAGCTCTCGTGGAtaatgttgtctttttaaacTCAGAttctgtaatattatatttcatactAACACTCagtacagattttatttttgtgcagtaCATTAGATTCCAATTATCGGTTTGGCCTCACTTTGTACCTCAGGGGCACCAGGCTGGATTGGCCTCAGTCTCTAATGCACCCCGCTATACAAATCGGTTTTGGAGCCGCTCGAAACGGAGAGGGGCGGTCTCGGGGACACAGAGGGGTCCGATAGGTCAGTCGAAAGGGTTGATCGGTCTGATCAGCTCTGTGATCGGCCAGGCTGACCGGGACCCGGCGAAGGAATCTGTTCTTGGCGTCTGCAGCCTCTCGCTTTCTCTCCCTTACTCGATGTTCAAACGGGCAGACGGTGATTTTACATGACGGAGGTTCAACAGATCTATTTAACTGACCCTGCGGCTAGCTTTGATATACAGTCTGTGCGTTGGTAATGTCTTCATTATCGCTCTAccgtttttattttgaataatccTCAATATTTCTGTGTACCCAACCGGAGTGCACACAGTTTGTCTTTGCTGGAGATTATTTGTCTTTTAAGAAATAGATTTCATTTCTGTCTTTGGCCGTGGGAGATATTGGATTGAGATTTTTTCGAGCAATGAAAAGAATGTAGTACTCCTCCAGACGACGACTCTCATAGCCTACGTGTACTTACATTGCAACGTCTGACAAATCCGCTTCAAGTGCAACTACCTAAGTATTATGACAGAATACGTATAGAATTGTTTTCCTTCAAAGCTCGGGATTTCCTGCATCGATTTAATATGGTAGCTCTGCTTTAAATCTCTATAAACAACAAGCAAACGAACAAAAtactaatacattaaatgaacaTTAATGACATTTGGGTGAGCATAACTCAAGGAGGAATAGGAAAGTGGTGTGTGAATTGGAGACCTAGTTTTCATTATACCACATCGGACTCTCCATGCCAAGCTTGAACCCCCGCCAAGATGGGTTTATGGTGGCAGAAGTACGGAGATGAGTTCTTCTCATTGTGAAACTATTACTTAACTGGTTTCCTTATCATAAATGTTGAtaatacaaacaggaaataaagtCAACAGGAAGGCCTGGGCTGgtcatactttattttatttttttcctctctctaaATGAAGGGAATCGTTTTATTCATGTGGAATAAAGTCAAACATTATGTAcaacagagagggaaaaaaaaaactttttgtgAATACTTAAAAAGCCATATATGATGAACAAGTGTGAACTGTTTTTTTCCTAAGGCATTCCATGCCAAATTGTGACATTGTTATTTTTGGAAGAACCTGATCAGATCCTTCGAAATGTGAATTAGGGACAAATCCTGAGGGAACGCATTGACCCCCAGTTCTAGCTTCATATctaatggtttcatttttatttttatttgattgctttTTGATATTGAGGGATGTGAAATTGAGCCCTGTGTGGTGCAGTAGATTTGTTTGGCAGAACTCTATCTTTCATGTGTCATTTCCCATGCAaagtaaaatggaaaattaacgATTTCGGTAAAAAAAGTCCACTAGTGTCTAATCTGTGTTCATTCAAGCAGCTGAGCTATAACTGAAGAGCCACTTTATCCCTGAATCCAGTTTAAACCACTTTCAGAAACTCTGGGAGTGTATAATCCAGTCCAGTTTTGGGTTGCTCAGCACTAATTAGATCCGGTAAGCCCGGTGTTGCCGCCTGTAGGGTGTTAATGTTTTCTATCAAACTGTCCCACTCGAGAGAAATCCACAGAACGCTCACAAGATTTTGTATCATCATATTTTTAGATGTCGAGGTATTTTCGGTATTGATGTGGATATGGATTCAAGGTTTTCTGGCAAGCTTATTTGTCCCTGACACGTATTGCATTTTGTAGCGAATGCTGCGTCGACACTCCCCAAGTTTGCGTTCGTAGGCAGAAGTGCTGAGAACAGGCTTCTCGAGATATTGATGAGTCGGTAAGATGTGCAGCACAACCGGTCAGATCTATAGCCTGGGTTAAAACCACCGGCGTCTTAAGAATTGCGGCCAGTGTGTGCCGCCTCTCCGACGCACACGTCAAGACACTTAATCTGCCAGAGAGGCTGCCAGGAAAAAGTGGTGTACGTTTCCTCCACAATAGGGCACCTTTAAAAAGGACGTGCTGCCCGTCAGCGTTTCTCTACAGCACCATTCAATATCGTTatgagttttgtttgtttttttacatcccTTCAGACCACAGACACTACAATGGCTCGTTACAATGCACCGCACTGTTGGTGAATTAACACGAGGAGTTCCTGCTAATGAAAAGGATGTTCTATAataagtgatttgtttttgtttaaccctcccccttaaaaaaaaaaaaaaaaaacctcttcatGCATTCAACAAGACCCCTAGTTTGGAAAGTGTTTATGCTTATGTGCAGTAACCCTAAATAGTTCAGAAACTATAAGCACCCATTAAAGAGTGTGGGCTATGAGAGGTTGCTGCAGAGGATGGTGACAGGAAGGTTGAACGGAGTACAGCTAGAGCAGATTCGTACTTGGCGAAACAACTTCTTTATAGAAGCTGGTCACATTCATCGTACTCTTGGCTCCAGGCGTTTGTCTTAAATATAGTGCATGAGAGGGTGCCTGCCCTCTGCtgtatatttaaacagattaaaaactgCATGTTTGTAAGTAAGTGTTAATAGCAAGTATGACCATTGCTGTTTATAATTAATATCCTAAAACTGGAGtaaaaaaaagcttatttatTCTTTTCCTTGGCTTTGTTTTCCTCTCAAAATCATACATGCTAATAATCCTTTCCGAACAAATGtgaatgcaaatgtttaaatatccGAGGTATCGTAGAGGGGTAACGACTCCGATCTCTGATCTAAAGATATGAAGCTACACATGTGGATGATGTTTTCAAATAAGATGAATAACGGggatcttttttatttttatttttggtatggaatcccttctctgtgtttgtacagtatatacaacaATTCCAATCTTCTCTGACCTTTTTTTGTAACATAccgtaaattatttttttggacTATTTATTGTTAAcagttgggggaaaaaaaagtgttttggttgtttaatattccagaaaaaagagaaaatgttgaaCCTCCAGTTTTAAGAGTTTCTCTATTTGTAAAAGGTGTTTTTACCCTTGTGgttataaatacagttttaaaaaaaaagttttcctgttttcttttactCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018249 True 8178 mRNA 0.53 22 5286386 5304453

Neighbor

gene id symbol gene type direction distance location
AMCG00018241 mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909 coding upstream 7461 5271199 ~ 5278925 (+)
AMCG00018244 nme3 coding upstream 53029 5227386 ~ 5233357 (+)
AMCG00018243 spsb3,LOC101158278,LOC106600674 coding upstream 63901 5213135 ~ 5222485 (+)
AMCG00018242 atp6v0c,LOC107552490,LOC106516477,LOC106517404,LOC107376678 coding upstream 81522 5193217 ~ 5204864 (+)
AMCG00018236 NA coding upstream 103323 5171502 ~ 5183063 (+)
AMCG00018254 LOC108274084,LOC107090247 coding downstream 76598 5381051 ~ 5392482 (+)
AMCG00018255 LOC106933195,LOC107091042,LOC103143274,LOC106958689,LOC108237146,LOC107388092,LOC103481993 coding downstream 222833 5527286 ~ 5528572 (+)
AMCG00018257 LOC108274018,LOC108413479,LOC107602438,LOC108437874,LOC107719913 coding downstream 287394 5591847 ~ 5604149 (+)
AMCG00018256 LOC101067528 coding downstream 318592 5623045 ~ 5633788 (+)
AMCG00018259 NA coding downstream 383852 5688305 ~ 5738824 (+)
G115099 NA non-coding upstream 185448 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 471967 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 692541 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 696312 4589295 ~ 4590074 (+)
G114940 NA non-coding upstream 899497 4386180 ~ 4386889 (+)
G115188 NA non-coding downstream 12000 5316453 ~ 5317925 (+)
G115201 NA non-coding downstream 40034 5344487 ~ 5344947 (+)
G115331 LOC100136012 non-coding downstream 741577 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 1221266 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 1313725 6618178 ~ 6620097 (+)
G115049 NA other upstream 522481 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 682281 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1093056 4186410 ~ 4193330 (+)
G114551 NA other upstream 2638612 2640846 ~ 2647774 (+)
G114518 NA other upstream 2717448 2491313 ~ 2568938 (+)
G115299 NA other downstream 645010 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 851035 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1406029 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2589174 7893627 ~ 7894449 (+)
G115648 NA other downstream 2815325 8119778 ~ 8122171 (+)

Expression


Co-expression Network