AMCG00018254 (LOC108274084,LOC107090247)


Basic Information

Item Value
gene id AMCG00018254
gene name LOC108274084,LOC107090247
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5381051 ~ 5392482 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018254
ATGAAGAGATGTGTGAATCATAAAAACAAGGCCGAGCAGAACGAAGAAAGCGTGGCCCGTGGAAATGTCAGTTGCAGGATGAAGAAGAAGCCCGGGCTGAAGATCCCGGATGATGTCTTCAAACAGAAAGAGCCGACCCCTGTACCACCTCGGAACCTGGACTCCAGGACCTTCATTACCATTGGAGACAAAAATTTCGAAGTGCAGGCGGATGACCTGGTGTCGCTGTCGGAGCTGGGCCGGGGGGCCTACGGCGTGGTGGAGAGGGTACGGCACGCACAGAGCGGGACCATCATGGCTGTGAAAaGGATAAGAGCCACAGTGAACAGCCAAGAACGCAAGCGGTTACTGATGGACCTGGACATTTCGATGCGGACGGTCGACTGCCCCTACACTGTGACGTTTTACGGAGCCCTGTTCAGAGAGGGTGACGTGTGGATTTGCATGGAACTGATGGACACCTCCTTGGACAAATTCTACAAAAAAGTGATAGAAAAAGGGAAGATTATACCTGAGGACATCCTGGGGAAAATGGCCGTGTCTATTGTCAAAGCGTTAGAACATTTGCATAGTAAGCTGTCCGTGATTCACAGAGACGTAAAGCCATCCAATGTCCTCATCAACAACGAAGGCCACgtgaaaatgtgtgattttggGATTAGTGGTTACCTGGTAGACTCTGTTGCAAAAACCCTTGATGCCGGCTGCAAACCGTACATGGCTcctgAGCGGATAAACCCAGAACTGAGCCAGAAAGGGTACAACGTGAAGTCTGACGTGTGGAGTCTGGGGATCACACTGATCGAGCTGGCCATCCTTCGGTTCCCGTATGAGTCGTGGGGGACGCCCTTCCAGCAGCTGAAGCAGGTGGTGGAGGAGCCCTCTCCCCAGCTCCCCCCCGACCGCTTCTCCCCCGAGTTTGTGGACTTCACAACACAGTGcttGAAAAAGAATCCAGCAGAAAGAATGAACTACCTTGCGCTAATGGAGCACCCATTCTTCAAACAACACGACACTAAGGAAACAGATGTAGCCTCCTTTGTGAAAGAGGTGCTAGAAGACAACCAGAACTGA

Function

NR:

description
PREDICTED: dual specificity mitogen-activated protein kinase kinase 6 isoform X1

GO: NA

KEGG:

id description
K04432 MAP2K3, MKK3; mitogen-activated protein kinase kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018254 True 1074 mRNA 0.52 12 5381051 5392482

Neighbor

gene id symbol gene type direction distance location
AMCG00018249 NA coding upstream 76598 5286386 ~ 5304453 (+)
AMCG00018241 mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909 coding upstream 102126 5271199 ~ 5278925 (+)
AMCG00018244 nme3 coding upstream 147694 5227386 ~ 5233357 (+)
AMCG00018243 spsb3,LOC101158278,LOC106600674 coding upstream 158566 5213135 ~ 5222485 (+)
AMCG00018242 atp6v0c,LOC107552490,LOC106516477,LOC106517404,LOC107376678 coding upstream 176187 5193217 ~ 5204864 (+)
AMCG00018255 LOC106933195,LOC107091042,LOC103143274,LOC106958689,LOC108237146,LOC107388092,LOC103481993 coding downstream 134804 5527286 ~ 5528572 (+)
AMCG00018257 LOC108274018,LOC108413479,LOC107602438,LOC108437874,LOC107719913 coding downstream 199365 5591847 ~ 5604149 (+)
AMCG00018256 LOC101067528 coding downstream 230563 5623045 ~ 5633788 (+)
AMCG00018259 NA coding downstream 295823 5688305 ~ 5738824 (+)
AMCG00018261 NA coding downstream 355587 5748069 ~ 5750422 (+)
G115201 NA non-coding upstream 36104 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 63126 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 280113 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 566632 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 787206 4593460 ~ 4593845 (+)
G115331 LOC100136012 non-coding downstream 653548 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 1133237 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 1225696 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 1261640 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 1266051 6658533 ~ 6667223 (+)
G115049 NA other upstream 617146 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 776946 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1187721 4186410 ~ 4193330 (+)
G114551 NA other upstream 2733277 2640846 ~ 2647774 (+)
G114518 NA other upstream 2812113 2491313 ~ 2568938 (+)
G115299 NA other downstream 556981 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 763006 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1318000 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2501145 7893627 ~ 7894449 (+)
G115648 NA other downstream 2727296 8119778 ~ 8122171 (+)

Expression


Co-expression Network