AMCG00018258


Basic Information

Item Value
gene id AMCG00018258
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5608590 ~ 5612475 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018258
CAGACACGAGGCACCATGGAGCGATGCCCAGACACCATGTACCACGACACACTTCTCCGCAAGTGCATCCCCTGCAAGGATGCGTGTGAGCAAAACCTCTCGGAGAAATGCATCCCTTTCTGCGTGGTCCTGCAGTGCGAATCGACACCAGGGAACTACTACGACAAGCTGCTGGACCAGTGCCTGCAGTGCTCGGAGGTGTGCGCCTCCAACATAAAGGAGTGCTCCGCCGTGTGCCAACAGCCGACGCTCGTGAGTCCTATGCAGAGGCCGGTAGGAGAGGGACTCACGGAGCACCACGCCGCCATCATCTACTTCCTGCTGGGCCTGTCCCTCGCTGTCCTCATGTGCACCCTGTCCGTCGCGCTGCTTGTCCTGGTCAAGAAGATGAAGCGCACCAAGATCGTCACTCCCTTCGAGAGCAAGGAGCCCAGCAAGCTGCCCACCAGGTCCTCCAAAGACCACTTGCTCGAGTCCGGCGGTCCGCTGGAGACCGATGCATGGAGAGGGGCGTCCAAGCCCACGGAGACCTGCCTCTACTGCTTCCCAGAGCTCAAGGCGGTCGGGAGAGCAGAGGGCAAGCACACAGAGGCGTCCCCCATCTACCAACAGGCGGCGCCCACCACTCCTCTGATCACCGGCACGGCCATTTCTACCCCCTACGAGAAGGACAGAACGTTTAAGATCATCTGCTCCCCGTCCCAGACCAGCACTTAATGGGTTCGTGCGAGAGAGCGCTGCACGGATTGCCCAACGCCGTCACGGGTTTTGGAAATGCCTTCAAGGTCGGAAAGCGGGCGTTGTGGGACTGTGCCGTATGCGAAAGGAGTTTGGGGAATAATGATTTAGTCCAGCTTTTTGGGAATTAAACGGAAATgaggaaccaccaggactccaGTCTTCATGTGGGAGGAGTCTCGTGTAAACTGCATCAGGGTTTCAAGGTTATTGGTAGCTGTTAGGAGAAAACCGTTTAGCAGATGAAGCTGCATTATGGGACACTTTGCAATTTAacctctcactcacacacacaatcctaaAAGGCTCTTTGGAAGTCTAACCACATTCACGCTGGAGTTTGAATAAGGTGGGCAGAGATAACTTATCCTGAGTATAGACTTCACAGGGTGCAACTAATCAACCGACTACACTGAGGAGGCACTCAACTCTTCAAATATGTAGACAATTGAATAATACAATCGCATCGCATTACACAACACAGATCCAGAGACGAGGGCGTAGTCAACAATATGCGATTTCTTTTTGTTCTCCGACTGAGCCTTTTGCTTCCGCAGCAATCCCAGGTGAAATCCCATCGCTGCGCTTCTGCGTCTGCCTACGTTTGCGCTTTGGAAAGATATGCCCATAAGATGCTCATTCATAATCCTTACAGATCTGAAAGTGTGGGACGACAATATTCGAGGCAGCGGCTTCTGGTAGAtagattacattattgtaatcCAACCACACAATCTAATGTTATTGTAAACCTAGAGCACAGTGGTGGGGGAGATGGGGGGGTACGAGGTGTCACCTGCACCATGTCTATAGTATAACACCCCCTCTCCACCACACAACAAAACCACATTCggtaatgcacattttaaaagataaataaatgaaataacttAGTTTCCTCACTAGTTTCATAAGCCTAAGAATAAAAAGGGATTCCTTTAGCAGTATGTTCCCCAAAGCCAGACGTCTTTATTCCCAACCGCTCTCAGAGCCAGATCACATCTCCATGCCAAGTGGCCTCACGCCTTTATGGGTCAGTCATACAGACAGGCTTAACACAACTGAACACCAACACACGCAGCAGCCACCGTTTCTTTGTTGTAACATTCAGACAGAGCAGGGGGACGCCTGGGGAGACGGGACCATCTCAGAACCAGACTCAATGGTCCTTCAGCTTCTTATGATGCAGGCCAAAGAATAATCAAAAAGGTGCAGCTTTTCATTcgctaaaaaacaaatataaatcaaatgcagTCAGGCCACAATTAATCAACAGAGCAGTGCAGCAGCAGAAGAGACTCACAGATGACAGTAACTGTAGCGCTACAACAGGGCAGCGTATCTTGACTGGATGTTGGTGAACACACCGACTCACTGCACACTTTATTCTTCCATCCCTTCAGAAGTGCTCAGGACTGGATATGTTCTCCCATCTTCTGAAGCCTTGTGTATGAATGTAAGAATTGTTTTCAATGCAGGGACATATTTCTCCTGGCATTATTTCAACTGTGAACCCTTTCGGTATGAGAGGTTATCCTGATCCCAATTCCCTATTGAGTTATACGAGATGagtaggatatatatatttgaatgcatcAGAGTAACTGGGGTATCCGGTGGACACTGTGAAAGAGTTCCTTCAATGCTCACGTTTTgcgaaaaaaataaataaagttgaaaCGATTGTGAAGCACA

Function

GO: NA

KEGG:

id description
K05150 TNFRSF13B, TACI, CD267; tumor necrosis factor receptor superfamily member 13B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018258 True 2433 mRNA 0.49 4 5608590 5612475

Neighbor

gene id symbol gene type direction distance location
AMCG00018250 tmem11,LOC106600685 coding downstream 253667 5349638 ~ 5354923 (-)
AMCG00018252 dhrs7b coding downstream 265606 5332241 ~ 5342984 (-)
AMCG00018253 NA coding downstream 286275 5311157 ~ 5322315 (-)
AMCG00018245 NA coding downstream 324657 5279354 ~ 5283933 (-)
AMCG00018247 NA coding downstream 339185 5233620 ~ 5269405 (-)
AMCG00018262 cops3 coding upstream 128554 5741029 ~ 5745704 (-)
AMCG00018264 rasd1,LOC107653935,LOC107720458 coding upstream 170601 5783076 ~ 5784900 (-)
AMCG00018265 NA coding upstream 182042 5794517 ~ 5808843 (-)
AMCG00018263 NA coding upstream 269071 5881546 ~ 5886000 (-)
AMCG00018274 clec16a coding upstream 455828 6068303 ~ 6124832 (-)
G115243 NA non-coding downstream 521 5607833 ~ 5608069 (-)
G115219 NA non-coding downstream 258960 5345762 ~ 5349630 (-)
G115202 NA non-coding downstream 263456 5344487 ~ 5345134 (-)
G115182 NA non-coding downstream 309087 5299014 ~ 5299503 (-)
G115181 NA non-coding downstream 309733 5298641 ~ 5298857 (-)
G115277 NA non-coding upstream 134983 5747458 ~ 5748359 (-)
G115278 NA non-coding upstream 137308 5749783 ~ 5750043 (-)
G115279 NA non-coding upstream 137617 5750092 ~ 5754022 (-)
G115332 LOC100136012 non-coding upstream 433555 6046030 ~ 6046618 (-)
G115395 NA non-coding upstream 605053 6217528 ~ 6219216 (-)
AMCG00018251 natd1,LOC107745813 other downstream 241836 5356846 ~ 5366754 (-)
G115183 NA other downstream 304161 5300107 ~ 5304429 (-)
G115174 NA other downstream 320717 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 956949 4646147 ~ 4651641 (-)
G115020 NA other downstream 1020293 4586062 ~ 4588297 (-)
G115320 NA other upstream 337946 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 998158 6610633 ~ 6652773 (-)
G115581 NA other upstream 2130743 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 3029421 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 3054262 8666737 ~ 8676808 (-)

Expression


Co-expression Network