Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00018262 |
| gene name | cops3 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030135.1 |
| NCBI id | CM030135.1 |
| chromosome length | 28454832 |
| location | 5741029 ~ 5745704 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| cops3 | Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS3 (COP9 signalosome subunit 3). |
| description |
|---|
| PREDICTED: COP9 signalosome complex subunit 3 |
| id | description |
|---|---|
| K12177 | COPS3, CSN3; COP9 signalosome complex subunit 3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00018262 | True | 1182 | mRNA | 0.47 | 11 | 5741029 | 5745704 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00018258 | NA | coding | downstream | 128554 | 5608590 ~ 5612475 (-) |
| AMCG00018250 | tmem11,LOC106600685 | coding | downstream | 386106 | 5349638 ~ 5354923 (-) |
| AMCG00018252 | dhrs7b | coding | downstream | 398045 | 5332241 ~ 5342984 (-) |
| AMCG00018253 | NA | coding | downstream | 418714 | 5311157 ~ 5322315 (-) |
| AMCG00018245 | NA | coding | downstream | 457096 | 5279354 ~ 5283933 (-) |
| AMCG00018264 | rasd1,LOC107653935,LOC107720458 | coding | upstream | 37372 | 5783076 ~ 5784900 (-) |
| AMCG00018265 | NA | coding | upstream | 48813 | 5794517 ~ 5808843 (-) |
| AMCG00018263 | NA | coding | upstream | 135842 | 5881546 ~ 5886000 (-) |
| AMCG00018274 | clec16a | coding | upstream | 322599 | 6068303 ~ 6124832 (-) |
| AMCG00018289 | NA | coding | upstream | 383009 | 6128713 ~ 6155791 (-) |
| G115243 | NA | non-coding | downstream | 132960 | 5607833 ~ 5608069 (-) |
| G115219 | NA | non-coding | downstream | 391399 | 5345762 ~ 5349630 (-) |
| G115202 | NA | non-coding | downstream | 395895 | 5344487 ~ 5345134 (-) |
| G115182 | NA | non-coding | downstream | 441526 | 5299014 ~ 5299503 (-) |
| G115181 | NA | non-coding | downstream | 442172 | 5298641 ~ 5298857 (-) |
| G115277 | NA | non-coding | upstream | 1754 | 5747458 ~ 5748359 (-) |
| G115278 | NA | non-coding | upstream | 4079 | 5749783 ~ 5750043 (-) |
| G115279 | NA | non-coding | upstream | 4388 | 5750092 ~ 5754022 (-) |
| G115332 | LOC100136012 | non-coding | upstream | 300326 | 6046030 ~ 6046618 (-) |
| G115395 | NA | non-coding | upstream | 471824 | 6217528 ~ 6219216 (-) |
| AMCG00018251 | natd1,LOC107745813 | other | downstream | 374275 | 5356846 ~ 5366754 (-) |
| G115183 | NA | other | downstream | 436600 | 5300107 ~ 5304429 (-) |
| G115174 | NA | other | downstream | 453156 | 5286386 ~ 5287873 (-) |
| AMCG00018220 | NA | other | downstream | 1089388 | 4646147 ~ 4651641 (-) |
| G115020 | NA | other | downstream | 1152732 | 4586062 ~ 4588297 (-) |
| G115320 | NA | other | upstream | 204717 | 5950421 ~ 5951055 (-) |
| AMCG00018291 | NA | other | upstream | 864929 | 6610633 ~ 6652773 (-) |
| G115581 | NA | other | upstream | 1997514 | 7743218 ~ 7773892 (-) |
| AMCG00018344 | NA | other | upstream | 2896192 | 8641896 ~ 8648807 (-) |
| AMCG00018339 | NA | other | upstream | 2921033 | 8666737 ~ 8676808 (-) |
