AMCG00018263


Basic Information

Item Value
gene id AMCG00018263
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5881546 ~ 5886000 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018263
CCAGAGGACGGCACTTACCACTGCATGAAGCGGACACTTACCACTGCATGAAGCaagcaaggaggaaaataaaaagccaggAGAGCTCCACATTGACCACCTACCGGATTTGATCTTTGTTTGTAATCTCTGTTTATAATGGAAAGCTGAAACACGCATGCGTTCTTATTCCCAGTACAATCTGTTACATTGTTGCTAAACTGCTGGCCGCGGCTCAATAATATCCATTTGCTTGTCAGAGAAAGACACGCGTTTGAAAGCCCGGTTTAGGATCCTGGAGCCCCACCTCATGCTGAAAATGACCGAGGAGCACGACAAGTCCCTCGCCGAGCCCCCCTGCAGCCCAGCGGGCACCTCCAGCTCCCTGTCCCAGGACGACTCGGACTCGGACGCGCCGTGCTCCCCGACGGGCTCGGACGGGCACGGGCAGTCCCGGCTGGGCAAGAAGCTGGAGGGCGAGGAGGACGAGCGCTTCCCCGCCTGCATCCGCGACGCCGTGTCCCAGGTGCTCAAGGGCTACGACTGGTCCCTGGTGCCCATGCCGGTGCGCGGCAGCGGCTCCCTGAAGAACAAGCCGCACGTCAAGAGGCCGATGAACGCCTTCATGGTGTGGGCGCAGGCTGCCCGCAGGAAGCTGGCGGACCAGTACCCGCACCTGCACAACGCCGAGCTCAGCAAGACCCTGGGCAAGCTGTGGAGATTATTATCCGAGAACGAAAAGCGGCCGTTTGTAGAAGAAGCCGAGCGCCTGCGAGTCCAGCACAAGAAAGATCACCCGGATTACAAGTACCAGCCCCGCAGGCGAAAGAGCGTCAAACCCGGCCAGAGCGACTCGGATTCGGGCGCCGAGCTGAACCACCACCCCTCAGGGCAGATGTACAAGGCAGAGCCGGGCATAGGGGGCATGACAGACGGGCACCATCACCCTGACCACGCAGGTCAGCCCCATGGGCCACCaactccccccaccacccctaAAACAGACCTACACCACGGAGGCAAGCAGGATCTGAAACAGGAAGGGAGACGCCTCCTGGACAACGGCCGGCAGAACATCGACTTCAGCAACGTGGACATCTCGGAGCTCAGCAGTGACGTCATCAGCAACATGGAGGCCTTTGACGTGCACGAGTTCGACCAGTACCTGCCGCTGAACGGGCACACCGCGCTGCCTTCGGACCACGGCCACGGACAGAACCCCGCCGCGGGGGCCTACGCTTCCACCTACAGCCACTCGGGTGGAAACGGCGCGGCCATTCAGATCTGGAGTCACAAAAGCACCACGTCCTCCTCCTCGCCCGCGTCCAGCAGCGAGGCAGGTCAGCAGAGACATATCAAGACGGAGCAGCTCAGCCCCAGCCACTACAGCGACCATTCCCACGGCTCCCCGGCCCACTCTGACTACGGCTCGTACCCCAGCCAAACCTGCGCCTCCTCGGCCGCCTCTGCGTCGGTCGCTGcctccttctccagctcccAGTGTGATTATACAGACCTTCAAAACTCAACCAACTACTACAACCCCTACTCGAGCTACCCCTCCAGTCTTTACCAGTACCCTTATTTTCACTCATCACGGCGCCCCTATGCAACCCCCATCCTCAACAGTCTGTCCATCCCTCCGTCCCACAGTCCAACAGCCAACTGGGACCAACCGGTGTACACAACTCTCACCAGGCCATAGAGAGTGGGGGACACGGTGCGGGACACTTCTCCAATTGCTAATAAAATGTCTTAAGGACTTTTGAAAGTTGCCCACAGCTTTCTGCACTAATGAAGGAATAGAATACAGTAGGTGGAGCGCTGTGccaatttggaaaataaaaaataaaataaagtgcctGCTGATTTAATATGATTGATCAATtttttaggaagaaaaaaatttTCCCTAGGCTTACTTGTTTGTGGCcatgcatattttgtttttctatgaaGAAATGGCTATTAAATTGTTTGTAAAAAGACAATGGTATGAATCCTCTGTGAGGACTATCTGAAGTTCACGGATATATACGTACATGTGTGtagttgtgtatatatatgtatgtgtgtgtgtgcatttctttctttttttttaaatctaaaatattcaATAAGGTGTATAAGACAATGTCGTGCACGTAGTTTTGAAACGGGCGATTTTATAAAGCACACTGGGACCAATTCTGTGATTTGGATGAAGTAATCCTCATTCACGGTTTGCTGCAGTTCTAGCAAAGCACAGGAACTCCGTAGTTGGACCAATCCTTTCAGTTTAATGTGTCAATTTATCAAAACAGGGTTTAACTCTCATTCTGGAAGTAAACGGTGTTGTTTTTGTATCCTAAGTTCATGTTTGGAATTTCTTTATtgctattaattaaataagggTATGATAAATTGTGttaggaaaataatgtgtaGTGTTTTATGTTGGAGGATTTTCACTAATTCTGCCAAAGTGGTGATTTAACCACTTTTTGCTTTGTAATGATGCACAGTACACACCGCCATTCCAGATTATAAAAGACAATATGATGTCCAGCAGCAACAGAAGTTTACTTTGCCGTTTTCCAAATTTATACGTTGGCAACCACAAAAGGGTTAAAGGAAACGGGTAAGATAATACAACACCTGCTTTGAGTGACAGACCAACTGCTGGGCGAGCGTTAAATCCAAACGGAAGGCCGGCCCTGCTAAGTTGTTACATGGTTTAAGCACCGTGGATGTTTTCGCTAAGGTAGCCAGattttatgaaaacacaaactcagacttattatattgtgttttccTCTCCCCAGGACCTGATTTTAGTCGTGAAGCTGTGAAACTAGAACTCTCCACTACATAGACAAACTTTTGGGATTACGTTAATAACATTCAAGATAGTAAATGTAAAGGGCTGAAGACACACAAATTCCTTCTGTAAACAGCTCTTTGTTTTTTACTAatacgtgtgtgtgcgtgcgtgtgtgcgtgttgtatttctactgttttttttattgtatgccGGGCATATAATAACTTTTTACACATGTAACACTAACTTGTGCCTTCAAAacgctttttttgtttttctaaaaatgtattttcgaATTGTCTTTTTCAGAAAGTATCTGAGCTGCATGTTTTATGCAATCTATTTTCTCTATTAAATTTGAAAGAAGTTCACTgtaaacaatctttttttttctttttctatgtcTTACTAGAAAATTCTCACAAGCACTGCTAACCTTTTGTGCAGGccc

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018263 True 3233 mRNA 0.48 3 5881546 5886000

Neighbor

gene id symbol gene type direction distance location
AMCG00018265 NA coding downstream 72703 5794517 ~ 5808843 (-)
AMCG00018264 rasd1,LOC107653935,LOC107720458 coding downstream 96646 5783076 ~ 5784900 (-)
AMCG00018262 cops3 coding downstream 135842 5741029 ~ 5745704 (-)
AMCG00018258 NA coding downstream 269071 5608590 ~ 5612475 (-)
AMCG00018250 tmem11,LOC106600685 coding downstream 526623 5349638 ~ 5354923 (-)
AMCG00018274 clec16a coding upstream 182303 6068303 ~ 6124832 (-)
AMCG00018289 NA coding upstream 242713 6128713 ~ 6155791 (-)
AMCG00018292 nubp1,LOC107690260,LOC107590599 coding upstream 272280 6158280 ~ 6182812 (-)
AMCG00018286 NA coding upstream 333973 6219973 ~ 6231007 (-)
AMCG00018293 grin2a,LOC107685916,LOC107690256,LOC107568390 coding upstream 423369 6309369 ~ 6464857 (-)
G115279 NA non-coding downstream 127524 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 131503 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 133187 5747458 ~ 5748359 (-)
G115243 NA non-coding downstream 273477 5607833 ~ 5608069 (-)
G115219 NA non-coding downstream 531916 5345762 ~ 5349630 (-)
G115332 LOC100136012 non-coding upstream 160030 6046030 ~ 6046618 (-)
G115395 NA non-coding upstream 331528 6217528 ~ 6219216 (-)
G115534 NA non-coding upstream 1115802 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1848097 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1855974 7741974 ~ 7742210 (-)
AMCG00018251 natd1,LOC107745813 other downstream 514792 5356846 ~ 5366754 (-)
G115183 NA other downstream 577117 5300107 ~ 5304429 (-)
G115174 NA other downstream 593673 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 1229905 4646147 ~ 4651641 (-)
G115020 NA other downstream 1293249 4586062 ~ 4588297 (-)
G115320 NA other upstream 64421 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 724633 6610633 ~ 6652773 (-)
G115581 NA other upstream 1857218 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 2755896 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 2780737 8666737 ~ 8676808 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04840115_04844233 SOX8, SOX8A coding CI01000047 null 4839563 ~ 4844233 (-)