AMCG00018272


Basic Information

Item Value
gene id AMCG00018272
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6155488 ~ 6160616 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018272
CGCCTGCGTGGCTCTTCTGCACCCATGTCAGAATGGCACTGTGCGCTATAAAGTTCATTAAATAACGATTAAACACAACCAGAGCAGCAAGAGCACCGGGGGTCCAAACATACATAGTCATTGTAACTGGGCGTTAAACATTGGCATCAGATGCGCGTCGGTGCAGTTTCCACAGTCACTGGTCCAAGGTCGTCCTGAGCAGCTGGTGATGCTGCGGCTGTTTCCTGCTCAGATGCACTTCAGCTCCAACTCGGACCCATTTGAGTGCAACACCGCTGGCTTCATCACTGCGACCACAATGCATGGATGCAGTGTGATTTTAAGGTTCAGATAAAGCATAACGAATCATCTGTCAGTAAACGAAGCGTATCTATTACGGTTTTCCAGCTACAATGAAGCAGGCACTGGTCGACGACACGGAGGATGTCTCTCTAGATTTCGGAGCCGAAGAAGAGGAGCTCGCTTTAAGGAAAACCAAAATAAGACATCCTCTGGCAACGTTTTTCCACCTGTTTTTCCGAATAAGCGCCATTGTTACCTACCTGTTCTGTGACTGGTTCAGCAAGAGCTTCGTGGCCTGTTTCGTGATGATCATTGCCCTGCTGTCCTGTGACTTCTGGTCAGTTAAGAACGTAACCGGGAGACTCCTGGTGGGACTGCGATGGTGGAATCAGATTGACGAGGATGGGAAGAGCCACTGGGTGTTCGAAGCAAGAAAGTCGTCCCCTCAGAACAAGGCCCCCTCCACGGAGGCAGAGGCTCGAATCTTCTGGCTGGGCCTCATCGTCTGTCCGCTCATCTGGACCGGCTTCTTTTTCAGCACGCTCTTCTCCTTGAAGCTGAAATGGCTGGCTCTGGTCATTGCGGGGATCTCTCTTCAGGCTGCCAATCTCTACGGCTATATCCGCTGTAAGGTTGGAGGCCAGGAAGGCATTACCACATCAGCTTCCTCCTTTCTAGGGCAGCAGTTTCCCCAGAGGACAATCCAGTACTGCAGTTGAACTGGGCCTGCAGGCAGAGTCGTCCAGTCTGTTGCCCGAGTTTTACAGCTGCATACAAGGAATGCAATGCCTACCATAGagatatttattatgtatatttatttttggtaactctatattttctttgaatattGCTGCTTTTGAATAGCACTGTTTAATATCGTTTTAATTTGTCAGtcatcatcataacaataaAAACGTTTCCTTTGCATTTACTGTGAGTTTTCACTTTTCAGTCGCTGCTGCTACTGATTTGCTAGAAGACACGTTAAATCCAGTCTGGTGGTTTATTAGTAGTGCATCACCAGGAATGTTAGTCTGTGCTTTCTTCTTGTGGCATATGAGACGAGCAGAACTCCTTGATACCTGTTTGGGAAAGAACATGTCTGTTTAATAATATACCAAGTATAGAGACTTTTACTTCATAGCTTCACATCTAACTATTCTATACAACTATTGTATTGTATCccgacccggggacacaaatggaaattgggcttcaaggcattcaaaacg
>TU144484
GTTTTCCCCGTACAGTCGTCCCCTCAGAACAAGGCCCCCTCCACGGAGGCAGAGGCTCGAATCTTCTGGCTGGGCCTCATCGTCTGTCCGCTCATCTGGACCGGCTTCTTTTTCAGCACGCTCTTCTCCTTGAAGCTGAAATGGCTGGCTCTGGTCATTGCGGGGATCTCTCTTCAGGCTGCCAATCTCTACGGCTATATCCGCTGTAAGGTTGGAGGCCAGGAAGGCATTACCACATCAGCTTCCTCCTTTCTAGGGCAGCAGTTTCCCCAGAGGcctgACATCATTTTTGGAGTGCTATGAACAGAAGACAATCCAGTACTGCAGTTGAACTGGGCCTGCAGGCAGAGTCGTCCAGTCTGTTGCCCGAGTTTTACAGCTGCATACAAGGAATGCAATGCCTACCATAGagatatttattatgtatatttatttttggtaactctatattttctttgaatattGCTGCTTTTGAATAGCACTGTTTAATATCGTTTTAATTTGTCAGtcatcatcataacaataaAAACGTTTCCTTTGCATTTACTGTGAGTTTTCACTTTTCAGTCGCTGCTGCTACTGATTTGCTAGAAGACACGTTAAATCCAGTCTGGTGGTTTATTAGTAGTGCATCACCAGGAATGTTAGTCTGTGCTTTCTTCTTGTGGCATATGAGACGAGCAGAACTCCTTGATACCTGTTTGGGAAAGAACATGTCT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018272 True 1517 mRNA 0.47 7 6155488 6160616
TU144484 False 719 lncRNA 0.45 4 6157959 6160488

Neighbor

gene id symbol gene type direction distance location
AMCG00018273 dexi,LOC107690264,LOC107567922,LOC107733843,LOC107590611,LOC107736577,LOC107685935 coding upstream 29719 6125500 ~ 6125769 (+)
AMCG00018269 NA coding upstream 93907 6060961 ~ 6061581 (+)
AMCG00018270 LOC100707100,LOC102798624,LOC101484267,LOC106579017,LOC107726261 coding upstream 115309 6036080 ~ 6040179 (+)
AMCG00018271 NA coding upstream 140261 5971814 ~ 6015227 (+)
AMCG00018268 NA coding upstream 191739 5952269 ~ 5963749 (+)
AMCG00018275 NA coding downstream 55609 6216225 ~ 6219216 (+)
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding downstream 88508 6249124 ~ 6249540 (+)
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding downstream 145779 6306395 ~ 6309843 (+)
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding downstream 178835 6339451 ~ 6365240 (+)
AMCG00018279 usp7 coding downstream 438982 6599598 ~ 6617618 (+)
G115331 LOC100136012 non-coding upstream 108954 6046030 ~ 6046534 (+)
G115201 NA non-coding upstream 810541 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 837563 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 1054550 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 1341069 4814018 ~ 4814419 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 365103 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 457562 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 493506 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 497917 6658533 ~ 6667223 (+)
G115467 NA non-coding downstream 573091 6733707 ~ 6780046 (+)
G115299 NA other upstream 204471 5949463 ~ 5951017 (+)
G115049 NA other upstream 1391583 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 1551383 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1962158 4186410 ~ 4193330 (+)
G114551 NA other upstream 3507714 2640846 ~ 2647774 (+)
AMCG00018280 NA other downstream 549866 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1733011 7893627 ~ 7894449 (+)
G115648 NA other downstream 1959162 8119778 ~ 8122171 (+)
G115789 NA other downstream 2532748 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 3039041 9199657 ~ 9206776 (+)

Expression


Co-expression Network