AMCG00018274 (clec16a)


Basic Information

Item Value
gene id AMCG00018274
gene name clec16a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6068303 ~ 6124832 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018274
CTCGACTGGCTCTCTCGCACTTCCCCGTGTGTGTAACAACAATTGTAAAACTACACAGTCAAGTGTCCTTCGCGGTACAACCCGGATGTAGCAGCTCCAGTTCGCTGTCGTCTGTCTGAAGTCTTGTGCGGTTTCGGGGGGGGGGACTAATAATTGCTGTTATTTCCGAATGTCAATGCttcgtttatttatttcttgctaTGTTTGTTTTGATAGTGGCGGTTGTGTACTAATGTAACGCCTGctgtaaaacaaaccaaaccagaaAACACTGCTAGTGAGATCATGTTCGGCCGGTCAAGAAGCTGGGTGGGAGGGGGGCAAGGCAAATCCAAAAGCATTCACTCTCTGGACCATCTAAAGTATATGTATCATGTCTTAACCAAAAACACCACAGTGACGGATCACAACAGGAATCTTCTTGTGGAGACCATTCGATCCATCACTGAAATCCTGATTTGGGGGGATCAGAATGACAGCTCTGTTTTTGACTTCTTTTTGGAAAAGaatatgtttgcttttttcctgAACATCCTTCGACAGAAATCTGGTCGCTACGTCTGTGTGCAGCTCCTTCAGACCCTGAATatactttttgaaaatataagtcATGAAACATCTCTTTATTATCTTCTGTCCAACAACCATGTCAACTCAATTATTGTCCACAAGTTTGACTTCTCTGATGAAGAGATTATGGCATACTATATTTCGTTCTTGAAGACCCTGTCCCTGAAACTCAATAACCACACTGTGCACTTCTTTTACAATGAGCACACTAATGATTTTGCCCTGTACACGGAGGCCATAAAATTTTTCAACCACCCCGAGAGCATGGTCAGAATTGCAGTCAGGACAATCACCCTTAATGTGTACAAAGTGGATAATCAGCACATGCTTCACTACATCAGAGACAAAACTGCCGTTCCCTACTTTTCGAACCTGGTGTGGTTCATCGGGAGTCACGTCATAGAGTTGGACAAATGTGTGCAGACCGACGAAGAGCACCGAAACCGAGGGAAGCTCAGTGACTTGGTGGCAGAACACCTTGACCATTTGCACTATCTCAACGACATCCTGATCATTAACTGTGAGTTCCTGAACGATGTCTTAACAGACCATCTCCTCAACAGACTATTCCTGCCCCTCTACGTCTACTCCTTAGTCAATCACGAGCAGACAGAAGATCGGAAGATAAGCCCTCAGGTGTCTCTGTACCTCCTGTCACAGGTGTTCCTTATAATACACTACCAGCCACTGGTCCACTCCTTGGCTGATGTCATTCTCAATGGAGACCTGTCTGTGTTCTCAGCCCAAGCAGAACAAGATGTACAGAAAAGCTGTTTGAATGCCAGTGTCCGGCGATTCACGAAGCCTGCCGAGAGTTTGGAGCGGTCCTTGGAAATAAATCGACGGCGAGGGAAGAAGAAGGTGCAGAAAAGACCCAACTATAAGAATGtgggtgaggaagaggaggaggagaaaggcCCCGAGGAGGGAATGGAAGACTCAGACAAGGCTAAAGGTACAGAGGCTAGTTCAAAAGGCAGCAAGACGAGTGGGGACACAGAAGAAATTGAGATGGTGGTAATGGAGAAGTGTAAGATTTCGGAGCTCTCGGGCTTGACGGAGCAGAACACGACGGATGAAGAGAAGACCGCTGCGGCCGCGGCCGGGACGGAGGCCCAGAGGAGCAGGCCTTTTTTGGACATGGTTTATAACGCACTGGACTGCACTATGGACGATTACTACGCGCTCTTTGTCCTGTGTCTCCTTTATGCCATGTCCCATAGCAAAGGTATCAACCCACAGCTCCTGGAGAAGATCCAGCTCCCCGTGCAGGAGGTGGAGAGGACCTCCTACAGCCAGGTGCTGGCTGAGAGACTCATTAGGGTGATGAACCAGGCCTGCCAGCCAGATGGGAAGGTCCGTCTGGCGACTCTCGAACTCAGCTGTCTGCTGCTCAAGCAGTTGGTTCTCTCGGGCAACAACTGCATCATTAAAGATGTCCATCTTGCCTGCTTAGagGGTGCCAGAGAAGAGAGTGTTCTTCTCTTGCGGCGCTTTTACAAGGGGGAAGAAATATTCTTGGACATGTTTGAAGATGAGTACAGGAGTATGacgAGTAAACCTCTGAACGTAGAGTATCTTATGATGGACGCCTCAATTCTGCTTCCCCCGACTGGTACCCCCCTGACTGGGATTGACTTTGTGAAGCGGCTCCCCTGTGGAGATGTGGAAAGAACAAGAAGGGCAATCCGTGTGTTCTTCATGCTGCGCTCGCTGTCCCTGCAGCTGCAGAGCGAGCCAGAGACGCAGCTTCCCCTGACCAGGCAGGAAGACCTCATTAAAACTGATGATGTGTTGGACCTGAATAACAGTGACCTGATTGCCTGTATGGTTGTGACAAAAGATGGTGCTCAAGCTCAGCGCTTCCTGGCGGTGGACGTGTATCAGATGAGTCTGGTCGAACCTGAAACCAAGCGTCTGGGATGGGGAGTGGTGAAGTTTGCCGGTTTGCTACAGGATATGCAAGTGTCAGGGGTTGAGGATGACAGTCGTGCCCTGAACATCATCATCCACAAGCCCACCTCCAATCCCCACGCCAAACCCTTCCCCATTCTGCAGGCTAATTTCATCTTTGCCGACCACATCCGCTGCATCATCGCAAAACAGAGGCTGGCCAAGGGTCGTATCCAAGCCCGGCGCATGAAAATGCAGAGAATAGCGGCCCTCCTGGATCTCCCTGTCCAGCCATCCTCGGATGTCCTGGGCTTCGGCCAGGGCGCGGCTGCTTCCTCTCAGCACCTGCCCTTCCggttCGCCGTGGCCCAGTGTATAAACCAGCACAGTCCGTCCCCACtgtcctccccctcccctccttccAGCGCCAGCGGCAGTGGGAGCACGGGGCACTGCGACTCAGTCACCGCCAGCACCATCTCCACCCCGTCTGCTGCTCAGAGCCCCTCAGCAGATGACCCCACTTTCCAAGAACAAACCCAGGCCTCCTTCCCGGAAGCAGTGGATTTTGGGGAAGAGACTGGCTCTGTAGTTTCCACTCCCGGCAAAGGTCAGAGTAGGGTCGTGGACGCCGGTGTGGCCCCCACCTTGGCCCCCAGTCTCACCCCGGCCCACCAGCCCACCATCTCGCTCATCTCTGACGACAACACGGATGCCCTGAGCGTGGAGTCGCTGACTATCCTGCCGCCCACCGACCCCACGCGACTCCGCAGCTTCAGCACGCAGTCTTCCACGCAGTCCGAACCCCGAGAGGGCCCCCGAGAGGAGGAGGCCAAGGCTGAGACCGAGGAAGACATGCAGGCCATTGGAGATGCAgccacaacaccaccaccaacaacaccacaaccaccaccatcgcagcagcagcagcacgtTGTAGACACGGACCAAGGCCCTCAAGGCTAGGTACCTATTGGGCATCTTTGTTAAAGTACACCCTACAGCGACGGAATGGATAGCAACCAACCTCCATTCCTTACTGTGTAAATAGACATCAGTTTTGTACAGAAAAGAGACATTTACAATGTTGTGGCTATTCTGCTTATATAATTGAATTTTTTCACTTGACATCTttccccgccccgccccgccaAGACATTTGAAAGCTTCTAATGAATTTTATCTACACACGAaggttttcagttttgtgtgtctttgtaagCTTTGCAGGCAACTGAAGACAGAAGCGCAGTGGAGTCAACTGGCATCTTTCCTCTAGAGATACAGCGATCAACTTTTAGACAGGTAGTTGTTTCTGTAAGTGAATGTGCCCAGTGGGGACTGGAGTCTGTTTTCCTGTATCTTTCTACTGCTGGCCAACTGATAAATGtaccatttaaaacaacattacatGGATACAAAAAACAAGTCATGATTTCAAGAGAATGAGAAGGAAATGAGAACTGTACACGGTAATAGATCCTGAATATACAGTAATAGTTTTGGTACACCTGCAGTAAATGATTAGAAATAGGATATTTTATCAATAATAAAcgcaaatgaaaacagaaatgaatcATCGGATTCTGCCTTTTATTAAGAAGGAAGTTTAGACACGAAcgcaaaaacttaaaaaaattcCGGTACTGCCTGTTCCAAAGACATCCGTTAATTTATTTGATCAAGTATCAGTAGTGATCAATGAAAGACCAGTCACTGATTAGACTAATGTGGATCCTTGATTCGGCCCAACTTCCCACAGATTAATTCTCCAACCTAATCATAGATGCGCTTCCACAGATTTGAAGTTTGCAGCACGTGGGTCGGCTTCAGTGAGATCTGTCTAGATTTTTGTACGTTGTAAGATACCATGTCCAGAATCTTTTTTTGCTTACCGAATCACCGCAGTTTGATTTGCCCATGGACTTGTAAAGATTTGATTTGAGGACGGATTCATCTCTGATCTCTCATCAGAAAGCAGTTGACAACATGAACTGAGAATATTGAAGTCCTATATTTGAGAGAAACCTTGCTAATGCTGTACTACCTGTTCACCATTTAGTTGTTTTAATACCTAGTTGTTTCCTGTTCATATGCCTGTGAAGATTGGGCGGATTAACACTTAGGGCTACTCACTCTTACCACTagtagaaaaataatttaagagaTTAAAGAGACCACTAAGCTTTTTCgtcttaaaatgtttctttctcaCAACTTTAAATTAACCGATGATGTTAAGTGAATCTGACAGGGTGTTTATTTGCAAAGCTAACAAATTTATTGTCCTTCCATTGTTCAAGAGTTAGCAGTACCTTCAGGAAGATTAGtcagaggtttttgtttttccccacttGTGTCTCTAACTTTAACCGCATTAAGGTGTTATAAGATTAGCTGAACCAATACTCAAATGGTCAAAAGATTAGGATTGCATGAGCAGAACTAGACCGAAAAACTCTCCTGGAGCTGTGATGGGCTTAAATATGTCGATAATTGTGATGAATAAAGGTTTCAGTCAAATGCTAGCagattttttcttattttttttttccagttctgaTGAAGGTaatatatttccaaataaatCAGATTATGCAGATTCTTGCTTTATTGGTTTCCAGTTAATTCCGGAAACACATTTGATGTGGTCACTTTACTGTGagtcttattttctttcaaacatgaaaagaaGAAGTACCTACACCATTACAATTTTAAGGAAGTACAAGaacttttactttgtttttgcttttcacttatttcaatcacaaaacaatttattttcattaatgcGAAGATCTTTTcaggttgtttgtgttttaattcctTCCCACCCATGGTAATGTCTGAAATAGCTGTGACACAGTCTTAGCCGATGACACAGCGCTGAATCGGCGCAGACTTGCTGTCAATCTAAACTCCATTTTAGGGATAACAGACACATCAGCAGACAGTGTGACATCAGGTGCAGAAAGCCTATAACATTGTGTCTATTGTGTCAGCCTGTTTTAAGCTATTCTGAAATGGTTTAAACGCAATACTAGTCTTCTGTGctacattattaaaacaatactgtaaaaaaatgtactttttggCATGTGGAAGCTGGGCAACATGGCAGGAAattctttgctttgtttaacTGGCAGGACGAAACTGgaacttattttaaacaatcaCTAATTCTGGTTGGGGCCTTCAAGAATGCAGGCTATTTACACTATTTTTTTGTCTCCCATCTACGTATCTCATGAACTTCATAATAGTGAGTTAAAACACAGTGCAGTTTGTAAGGACTCCCTGCGCTGCTCTTTGATCCAGATTCCCTcgagtttcttgtttttttttttttttttagaacaaaAGGGTTGGGATCCCATTTACCAGACCAGACCAGAAAACAACATATTGCCACATTGGCTGGCAGACTTAGTTTTTTCCCTACAATACTGTAGTGATTTTGTTGCGGTGATTGGCTAGGCTGAAATTCCTTAATTATCTAGAATATCTGTTATGTTTCCCTCACAGTTCCTCACTCACTTTCGTATATTGAATGCATCGTGGCTGTCAAAACAGTTAGCAACTGGGTCAACACACCTGGTAAGGTTCAAGGTTTATTTGACATTTCTCCAATATTCTTCAGGCTCAATCAGTATGTGATCCTGGAATTCTGACATTCTCAGGATGATTTCAGTCATGGACAAATGCTGGCCTTGGGCAAAATGAGTGAATTTAAAGCAATACTTCAGCAAATATTTCAGGAAACACTTTCTTGCCTAAAAAGGGCAGTGttttcacttgtgtaaattgtatgcATATCAAAAAAGCAATTCTTCTTAGTGTTTCTGTATTAAAGTGCTACTTGCTTTTCATCTGTATACAAACATTACCAATGGAACTTGTTAACGGAGAATTgcaataaattattgtattcagTGATGG

Function

symbol description
clec16a Predicted to be involved in endosomal transport; endosome to lysosome transport; and regulation of autophagosome maturation. Predicted to be active in endolysosome membrane. Predicted to be integral component of membrane. Predicted to colocalize with late endosome. Human ortholog(s) of this gene implicated in Addison's disease; multiple sclerosis; rheumatoid arthritis; and type 1 diabetes mellitus. Orthologous to human CLEC16A (C-type lectin domain containing 16A).

NR:

description
PREDICTED: protein CLEC16A isoform X2

GO: NA

KEGG:

id description
K19513 CLEC16A; protein CLEC16A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018274 True 6408 mRNA 0.45 23 6068303 6124832

Neighbor

gene id symbol gene type direction distance location
AMCG00018263 NA coding downstream 182303 5881546 ~ 5886000 (-)
AMCG00018265 NA coding downstream 259460 5794517 ~ 5808843 (-)
AMCG00018264 rasd1,LOC107653935,LOC107720458 coding downstream 283403 5783076 ~ 5784900 (-)
AMCG00018262 cops3 coding downstream 322599 5741029 ~ 5745704 (-)
AMCG00018258 NA coding downstream 455828 5608590 ~ 5612475 (-)
AMCG00018289 NA coding upstream 3881 6128713 ~ 6155791 (-)
AMCG00018292 nubp1,LOC107690260,LOC107590599 coding upstream 33448 6158280 ~ 6182812 (-)
AMCG00018286 NA coding upstream 95141 6219973 ~ 6231007 (-)
AMCG00018293 grin2a,LOC107685916,LOC107690256,LOC107568390 coding upstream 184537 6309369 ~ 6464857 (-)
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding upstream 460144 6584976 ~ 6593102 (-)
G115332 LOC100136012 non-coding downstream 21685 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 314281 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 318260 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 319944 5747458 ~ 5748359 (-)
G115243 NA non-coding downstream 460234 5607833 ~ 5608069 (-)
G115395 NA non-coding upstream 92696 6217528 ~ 6219216 (-)
G115534 NA non-coding upstream 876970 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1609265 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1617142 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 1617709 7742541 ~ 7742747 (-)
G115320 NA other downstream 117248 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 701549 5356846 ~ 5366754 (-)
G115183 NA other downstream 763874 5300107 ~ 5304429 (-)
G115174 NA other downstream 780430 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 1416662 4646147 ~ 4651641 (-)
AMCG00018291 NA other upstream 485801 6610633 ~ 6652773 (-)
G115581 NA other upstream 1618386 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 2517064 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 2541905 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 3114980 9239812 ~ 9258202 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026375 clec16a coding NC_007114.7 CM002887.2 26823788 ~ 26906656 (-)
grasscarp (Ctenopharyngodon idella) CI01000069_00411079_00477452 CLEC16A coding CI01000069 null 410292 ~ 477452 (-)