AMCG00018275


Basic Information

Item Value
gene id AMCG00018275
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6216225 ~ 6219216 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018275
ATCTGTCACTTGACATTTGTAAccattttcctatttttttttctttattttgtatagattCTGCTCTTGCTTTGATTTCATCCATCCACTTCACAATGTTGGTAATATTAGCATTTATTATCCTGTTCCACGTCATCTCCGCAATCCTACTCTTCATCTCCACAATACATAATGCATGGTGGACAGGCACCAACTACATCACTGACCTATGGAAGACCTGCAATGAAACGTGTGTACCGATTCCAGACAGCAGCTCAACCAGTGCAGgctaCCTCCAGGCCGTGCAGGCAACCATGATATTGGCCACCATCCTCTGCTGCGTGGGCTTCTTTGTGTTCATCCTCCAGCTCTTCCGCCTGAAGCAAGGGGAAAGATTCGTGTTCACAGCCGTCATCCAACTGTTGTCTTctctttGCGTAATGATTGCAGCTTCGATTTACACCGCCGAGCACAAGAGCTTTCATCCAGGGAGTTTGAAAGACGGCGACTTTGGGTCCTCCTTCGTTCTAGCTTGGATTGCGTTTCCCCTGACCCTGCTCAGCGGCTTGATGTATCTAGTTCTGAGGAAGCGCAAATGAAGGACGGTGACCCCTGTTCCGCAAGAATAACCAACTGCCACCCGCAAGTcaaaggaatacattttgtatataattcttttttaaatgtatagtgaAAATACAATGACAAAATATTACTAAGATTGCAACAATATATTAACAGTAGCATACTGGAAACCTATATAAAACTAGGAATTGTATTATATAGAAGTTTAACCCTTttgtaccattttaaaatatataaactttaaCCCTATTCTTGGTGAAGCCATATATGCTGTGATTAAAAGGCTTAATAGCTGGAGTACTGATCGGATGTGCAGacttgaaaactaaaataactgcAAGACATCCACAAAACGTTTTGGTATTAGACTTGCCCTCAAGACATCCATTTATTGCTTTAACCACTAGACAGCTATAAAGTTGAGAAGCCTTCCATTTAACATTTCCAAGTTGTGAAATTGCTTTTTGGTTACACTGTCACCACCCTATTTTACGATTATCCTTTGACATGTGAATCGGGCAGCGTTAGTACAATTGGGAAATGTTGCATTTTGGTTTAAGAGTTTCACTGACCTAAGCTTTATTAGAAGCCAGATCAAAGTACAATATGATGCAGCCACATCTGCAGGGCACTACGTTTTACttgaaaatgaacattaaattatttcattgcaaaattaaaaagtggaaaacTTCATACATAGGCGTTTTCAGTCAACCCACTAAGGCCGGCCGTGAACACTATTTTGTACACCTATGCGAAGCCAAAAAGAAATTCAACGAGGTATCTTAGATGGATTGTCATTAAGCTCCAAACTGAAGCCTACTGGAGCCAGAACACATCTAAAAGGAGAGCCCTGTGTTCTTGTTAAACGCGCTTCATTCATGTGAATATTTTTCACCTAATGTATTACTCTACacagtgagttttttttttttttttttttttttttttttaagaactttTATGTTCAGTGTGCAGAATTTTGATCCAGAGATCTGtgttcagtttaaaacaaattacattttttttttttttaaatgaagttatACATTAGTATAAGGGTAATTTGAAGTAGATAGTTGGGAATCAGATTGgatttcttttgtgtgtgtaggtCCATCTATATAAATGGTTTTAGTCCTTAGGAAGGTAAAAACCACAATTTTGAATTGAAGATGCCAAAGTAACtgaagctgtatttattttatagataggcttttttgcattaatttagattttttttcttcacaaagtGTTATTACAATTtgcttgatttttctttttaccttaatgtatacaaattaaaatgttttgtgttggtAAATACTGAAGGGCTTTTAAAAACACCGTGGCAGCTTTTCATGCTTTGGGTCTTAAACGGATATAGATCTGCATTTTTCCAGTGTTTCCAGCAGAGCTTGACACCGAATCCTGCCAAGGGTTCGACATGTATGTGGAtccaatgaaatgtatttttacattaaaaaacaactttgaaatCTTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018275 True 2071 mRNA 0.37 4 6216225 6219216

Neighbor

gene id symbol gene type direction distance location
AMCG00018273 dexi,LOC107690264,LOC107567922,LOC107733843,LOC107590611,LOC107736577,LOC107685935 coding upstream 90456 6125500 ~ 6125769 (+)
AMCG00018269 NA coding upstream 154644 6060961 ~ 6061581 (+)
AMCG00018270 LOC100707100,LOC102798624,LOC101484267,LOC106579017,LOC107726261 coding upstream 176046 6036080 ~ 6040179 (+)
AMCG00018271 NA coding upstream 200998 5971814 ~ 6015227 (+)
AMCG00018268 NA coding upstream 252476 5952269 ~ 5963749 (+)
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding downstream 29908 6249124 ~ 6249540 (+)
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding downstream 87179 6306395 ~ 6309843 (+)
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding downstream 120235 6339451 ~ 6365240 (+)
AMCG00018279 usp7 coding downstream 380382 6599598 ~ 6617618 (+)
AMCG00018282 NA coding downstream 469421 6688637 ~ 6704131 (+)
G115331 LOC100136012 non-coding upstream 169691 6046030 ~ 6046534 (+)
G115201 NA non-coding upstream 871278 5344487 ~ 5344947 (+)
G115188 NA non-coding upstream 898300 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 1115287 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 1401806 4814018 ~ 4814419 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 306503 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 398962 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 434906 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 439317 6658533 ~ 6667223 (+)
G115467 NA non-coding downstream 514491 6733707 ~ 6780046 (+)
AMCG00018272 NA other upstream 55609 6155488 ~ 6160616 (+)
G115299 NA other upstream 265208 5949463 ~ 5951017 (+)
G115049 NA other upstream 1452320 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 1612120 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 2022895 4186410 ~ 4193330 (+)
AMCG00018280 NA other downstream 491266 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1674411 7893627 ~ 7894449 (+)
G115648 NA other downstream 1900562 8119778 ~ 8122171 (+)
G115789 NA other downstream 2474148 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2980441 9199657 ~ 9206776 (+)

Expression


Co-expression Network